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@ -38,7 +38,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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@ -385,19 +385,19 @@ names or codes, this would have worked exactly the same way:</p>
<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
<span><span class="co"># rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
<span><span class="co"># 1 R S S R I S</span></span>
<span><span class="co"># 2 S I I S I I</span></span>
<span><span class="co"># 3 R I S R R R</span></span>
<span><span class="co"># 4 S R S I S R</span></span>
<span><span class="co"># 5 R S R S S R</span></span>
<span><span class="co"># 6 I I S S S I</span></span>
<span><span class="co"># 1 R R R I S I</span></span>
<span><span class="co"># 2 S I R S I I</span></span>
<span><span class="co"># 3 R S R I R R</span></span>
<span><span class="co"># 4 I I I I R R</span></span>
<span><span class="co"># 5 I R I R S R</span></span>
<span><span class="co"># 6 S R S I I I</span></span>
<span><span class="co"># kanamycin</span></span>
<span><span class="co"># 1 I</span></span>
<span><span class="co"># 1 S</span></span>
<span><span class="co"># 2 R</span></span>
<span><span class="co"># 3 R</span></span>
<span><span class="co"># 3 S</span></span>
<span><span class="co"># 4 I</span></span>
<span><span class="co"># 5 I</span></span>
<span><span class="co"># 6 R</span></span></code></pre></div>
<span><span class="co"># 5 S</span></span>
<span><span class="co"># 6 S</span></span></code></pre></div>
<p>We can now add the interpretation of MDR-TB to our data set. You can
use:</p>
<div class="sourceCode" id="cb9"><pre class="downlit sourceCode r">
@ -438,40 +438,40 @@ Unique: 5</p>
<tr class="odd">
<td align="left">1</td>
<td align="left">Mono-resistant</td>
<td align="right">3263</td>
<td align="right">65.26%</td>
<td align="right">3263</td>
<td align="right">65.26%</td>
<td align="right">3198</td>
<td align="right">63.96%</td>
<td align="right">3198</td>
<td align="right">63.96%</td>
</tr>
<tr class="even">
<td align="left">2</td>
<td align="left">Negative</td>
<td align="right">970</td>
<td align="right">19.40%</td>
<td align="right">4233</td>
<td align="right">84.66%</td>
<td align="right">997</td>
<td align="right">19.94%</td>
<td align="right">4195</td>
<td align="right">83.90%</td>
</tr>
<tr class="odd">
<td align="left">3</td>
<td align="left">Multi-drug-resistant</td>
<td align="right">433</td>
<td align="right">8.66%</td>
<td align="right">4666</td>
<td align="right">93.32%</td>
<td align="right">438</td>
<td align="right">8.76%</td>
<td align="right">4633</td>
<td align="right">92.66%</td>
</tr>
<tr class="even">
<td align="left">4</td>
<td align="left">Poly-resistant</td>
<td align="right">229</td>
<td align="right">4.58%</td>
<td align="right">4895</td>
<td align="right">97.90%</td>
<td align="right">257</td>
<td align="right">5.14%</td>
<td align="right">4890</td>
<td align="right">97.80%</td>
</tr>
<tr class="odd">
<td align="left">5</td>
<td align="left">Extensively drug-resistant</td>
<td align="right">105</td>
<td align="right">2.10%</td>
<td align="right">110</td>
<td align="right">2.20%</td>
<td align="right">5000</td>
<td align="right">100.00%</td>
</tr>