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@ -10,7 +10,7 @@
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9092</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9093</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -183,41 +183,42 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.002 0.005 32 32 >=256 0.025 8 0.001 64 0.0625</span>
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<span class="r-out co"><span class="r-pr">#></span> [11] >=256 8 1 64 0.025 128 0.01 64 0.025 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 4 0.002 0.5 0.001 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.5 0.25 8 0.025 0.01 2 0.025 8 64 256 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 256 0.0625 128 0.005 64 1 256 4 16 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 256 8 0.001 4 32 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 32 43 22 35 41 40 26 6 34 37 42 11 50 10 41 8 7 44 31 19 44 26 16 46 33</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 41 32 18 50 41 40 44 26 32 22 48 24 42 49 7 16 19 15 39 9 50 46 27 41 19</span>
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<span class="r-in"><span><span class="fu">random_rsi</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'rsi'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R S S S I R S R S R R R R R S R S S R R I R I R S</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R R I I S I R I I R I I S I R S R S R R I R I I S</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.01 0.125 2 <=0.001 0.025 0.125 0.5 0.5 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 16 2 0.25 1 64 0.0625 0.5 0.002 0.01 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.5 0.01 0.5 0.025 0.0625 1 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] <=0.005 8 0.0625 1 0.125 0.025 0.125 0.025 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.01 0.5 0.125 16 2 64 16 0.0625 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 32 0.0625 4 64 0.0625 >=128 <=0.005</span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 4 8 4 16 2 8 16 16 2 1 1 4 8 1 16 8 1 2 2 4 1 8 1 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.25 4 4 8 4 0.5 32 8 32 8 64 4 2 8 64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 16 0.25 4 0.5 2 8 2 16 4 4 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 0.0625 4 4 0.0625 8 8 0.25 0.25 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 4 0.25 0.125 0.125 8 4 2 0.0625 1 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.0625 1 0.5 16 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.125 0.5 4 8 1 1 0.5 8 0.25 0.25 0.125 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 0.5 8 0.5 0.125 0.125 2 0.25 8 4 2 0.125 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 8 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 44 19 39 43 28 43 13 43 29 8 33 45 19 20 10 32 9 30 35 37 23 40 18 27 22</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 33 38 45 45 16 20 31 36 34 30 44 26 18 37 31 48 8 38 50 35 9 22 49 46 23</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 14 12 11 16 16 13 15 14 15 13 16 15 13 15 12 16 13 11 17 17 14 15 12 13 15</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 13 12 16 14 17 16 17 11 12 14 17 12 12 14 13 16 15 13 12 12 12 16 15 17</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 15 15 27 18 26 16 23 18 18 27 23 15 21 26 15 16 23 25 18 18 18 17 24 25 21</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 26 15 18 19 17 15 26 25 18 19 23 16 16 15 24 15 21 22 26 25 24 22 24 21 25</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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