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(v1.4.0.9044) mo tibble printing, mo_shortname() fix

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dr. M.S. (Matthijs) Berends
2020-12-24 23:29:10 +01:00
parent 128ebcfd62
commit df37584189
96 changed files with 1039 additions and 2847 deletions
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NEWS.md
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# AMR 1.4.0.9043
## <small>Last updated: 22 December 2020</small>
# AMR 1.4.0.9044
## <small>Last updated: 24 December 2020</small>
### New
* Function `is_new_episode()` to determine patient episodes which are not necessarily based on microorganisms. It also supports grouped variables with e.g. `mutate()`, `filter()` and `summarise()` of the `dplyr` package:
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* Fix for plotting MIC values with `plot()`
* Added `plot()` generic to class `<disk>`
* LA-MRSA and CA-MRSA are now recognised as an abbreviation for *Staphylococcus aureus*, meaning that e.g. `mo_genus("LA-MRSA")` will return `"Staphylococcus"` and `mo_is_gram_positive("LA-MRSA")` will return `TRUE`.
* Fix for printing class <mo> in tibbles when all values are `NA`
* Fix for `mo_shortname()` when the input contains `NA`
* If `as.mo()` takes more than 30 seconds, some suggestions will be done to improve speed
### Other
* All messages and warnings thrown by this package now break sentences on whole words
* More extensive unit tests
* Internal calls to `options()` were all removed in favour of a new internal environment `mo_env`
* Our website now also has a dark theme, that switches on automatically based on system settings (such as Night Mode in macOS)
# AMR 1.4.0