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Code Releases Activity

Built site for AMR: 2.0.0.9020@c6135d2

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2023-05-26 14:18:12 +00:00
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commit e0222b5d61
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news/index.html
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@ -10,7 +10,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9019</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9020</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -89,28 +89,28 @@
</li>
<li class="nav-item dropdown">
<a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown--with-other-pkgs">
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With other pkgs
</a>
<div class="dropdown-menu" aria-labelledby="dropdown--with-other-pkgs">
<a class="dropdown-item" href="../articles/other_pkg.html">
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<span class="fa fa-layer-plus"></span>
AMR &amp; dplyr/tidyverse
</a>
<a class="dropdown-item" href="../articles/other_pkg.html">
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<span class="fa fa-layer-plus"></span>
AMR &amp; data.table
</a>
<a class="dropdown-item" href="../articles/other_pkg.html">
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<span class="fa fa-layer-plus"></span>
AMR &amp; tidymodels
</a>
<a class="dropdown-item" href="../articles/other_pkg.html">
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<span class="fa fa-layer-plus"></span>
AMR &amp; base R
</a>
@ -159,12 +159,12 @@
</div>
<div class="section level2">
<h2 class="pkg-version" data-toc-text="2.0.0.9019" id="amr-2009019">AMR 2.0.0.9019<a class="anchor" aria-label="anchor" href="#amr-2009019"></a></h2>
<h2 class="pkg-version" data-toc-text="2.0.0.9020" id="amr-2009020">AMR 2.0.0.9020<a class="anchor" aria-label="anchor" href="#amr-2009020"></a></h2>
<div class="section level3">
<h3 id="changed-2-0-0-9019">Changed<a class="anchor" aria-label="anchor" href="#changed-2-0-0-9019"></a></h3>
<ul><li>Added oxygen tolerance to over 25,000 bacteria in the <code>microorganisms</code> data set
<h3 id="changed-2-0-0-9020">Changed<a class="anchor" aria-label="anchor" href="#changed-2-0-0-9020"></a></h3>
<ul><li>Added oxygen tolerance from BacDive to over 25,000 bacteria in the <code>microorganisms</code> data set
<ul><li>Added <code><a href="../reference/mo_property.html">mo_oxygen_tolerance()</a></code> to retrieve the values</li>
<li>Added <code><a href="../reference/mo_property.html">mo_is_anaerobic()</a></code> to determine which species are obligate anaerobic bacteria</li>
<li>Added <code><a href="../reference/mo_property.html">mo_is_anaerobic()</a></code> to determine which genera/species are obligate anaerobic bacteria</li>
</ul></li>
<li>Added LPSN and GBIF identifiers, and oxygen tolerance to <code><a href="../reference/mo_property.html">mo_info()</a></code>
</li>
@ -180,6 +180,8 @@
<li>Fixed usage of <code>icu_exclude</code> in <code>first_isolates()</code>
</li>
<li>Improved <code><a href="../reference/as.mo.html">as.mo()</a></code> algorithm for searching on only species names</li>
<li>Updated the code table in <code>microorganisms.codes</code>
</li>
</ul></div>
</div>
<div class="section level2">