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(v1.4.0.9030) as.mo() fix for known lab codes

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2020-12-03 16:59:04 +01:00
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40 changed files with 136 additions and 124 deletions

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# AMR 1.4.0.9029
## <small>Last updated: 1 December 2020</small>
# AMR 1.4.0.9030
## <small>Last updated: 3 December 2020</small>
### New
* Function `is_new_episode()` to determine patient episodes which are not necessarily based on microorganisms. It also supports grouped variables with e.g. `mutate()`, `filter()` and `summarise()` of the `dplyr` package:
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* Fix for using parameter `reference_df` in `as.mo()` and `mo_*()` functions that contain old microbial codes (from previous package versions)
* Fix for using `as.rsi()` on a data.frame in older R versions
* `as.rsi()` on a data.frame will not print a message anymore if the values are already clean R/SI values
* Fixed a bug where `mo_uncertainties()` would not return the results based on the MO matching score
* Fixed a bug where `as.mo()` would not return results for known laboratory codes for microorganisms
### Other
* All messages and warnings thrown by this package now break sentences on whole words