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(v1.4.0.9030) as.mo() fix for known lab codes

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dr. M.S. (Matthijs) Berends
2020-12-03 16:59:04 +01:00
parent 4c114ff4b4
commit e03b3c96d3
40 changed files with 136 additions and 124 deletions
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2
tests/testthat/test-data.R
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@ -40,6 +40,8 @@ test_that("data sets are valid", {
expect_true(all(example_isolates$mo %in% microorganisms$mo))
expect_true(all(microorganisms.translation$mo_new %in% microorganisms$mo))
expect_true(all(rsi_translation$mo %in% microorganisms$mo))
expect_true(all(intrinsic_resistant$microorganism %in% microorganisms$fullname)) # also important for mo_is_intrinsic_resistant()
expect_true(all(intrinsic_resistant$antibiotic %in% antibiotics$name))
expect_false(any(is.na(microorganisms.codes$code)))
expect_false(any(is.na(microorganisms.codes$mo)))
expect_false(any(microorganisms.translation$mo_old %in% microorganisms$mo))