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@ -38,7 +38,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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@ -385,19 +385,19 @@ names or codes, this would have worked exactly the same way:</p>
<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
<span><span class="co"># rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
<span><span class="co"># 1 R I S R R S</span></span>
<span><span class="co"># 2 I R I S R S</span></span>
<span><span class="co"># 3 R R I I S I</span></span>
<span><span class="co"># 4 I I R R S I</span></span>
<span><span class="co"># 5 R I I I R I</span></span>
<span><span class="co"># 6 S S I R R S</span></span>
<span><span class="co"># 1 I S R S I S</span></span>
<span><span class="co"># 2 S R R I I S</span></span>
<span><span class="co"># 3 S R I S S R</span></span>
<span><span class="co"># 4 S I I I I I</span></span>
<span><span class="co"># 5 R S R S I R</span></span>
<span><span class="co"># 6 R S I R R I</span></span>
<span><span class="co"># kanamycin</span></span>
<span><span class="co"># 1 S</span></span>
<span><span class="co"># 2 S</span></span>
<span><span class="co"># 3 S</span></span>
<span><span class="co"># 4 I</span></span>
<span><span class="co"># 5 I</span></span>
<span><span class="co"># 6 S</span></span></code></pre></div>
<span><span class="co"># 4 R</span></span>
<span><span class="co"># 5 S</span></span>
<span><span class="co"># 6 R</span></span></code></pre></div>
<p>We can now add the interpretation of MDR-TB to our data set. You can
use:</p>
<div class="sourceCode" id="cb9"><pre class="downlit sourceCode r">
@ -438,40 +438,40 @@ Unique: 5</p>
<tr class="odd">
<td align="left">1</td>
<td align="left">Mono-resistant</td>
<td align="right">3214</td>
<td align="right">64.28%</td>
<td align="right">3214</td>
<td align="right">64.28%</td>
<td align="right">3246</td>
<td align="right">64.92%</td>
<td align="right">3246</td>
<td align="right">64.92%</td>
</tr>
<tr class="even">
<td align="left">2</td>
<td align="left">Negative</td>
<td align="right">1018</td>
<td align="right">20.36%</td>
<td align="right">4232</td>
<td align="right">84.64%</td>
<td align="right">950</td>
<td align="right">19.00%</td>
<td align="right">4196</td>
<td align="right">83.92%</td>
</tr>
<tr class="odd">
<td align="left">3</td>
<td align="left">Multi-drug-resistant</td>
<td align="right">439</td>
<td align="right">8.78%</td>
<td align="right">4671</td>
<td align="right">93.42%</td>
<td align="right">462</td>
<td align="right">9.24%</td>
<td align="right">4658</td>
<td align="right">93.16%</td>
</tr>
<tr class="even">
<td align="left">4</td>
<td align="left">Poly-resistant</td>
<td align="right">228</td>
<td align="right">4.56%</td>
<td align="right">4899</td>
<td align="right">97.98%</td>
<td align="right">231</td>
<td align="right">4.62%</td>
<td align="right">4889</td>
<td align="right">97.78%</td>
</tr>
<tr class="odd">
<td align="left">5</td>
<td align="left">Extensively drug-resistant</td>
<td align="right">101</td>
<td align="right">2.02%</td>
<td align="right">111</td>
<td align="right">2.22%</td>
<td align="right">5000</td>
<td align="right">100.00%</td>
</tr>