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website update
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DESCRIPTION
52
DESCRIPTION
@ -6,32 +6,32 @@ Description: Functions to simplify and standardise antimicrobial resistance (AMR
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data analysis and to work with microbial and antimicrobial properties by
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using evidence-based methods, as described in <doi:10.18637/jss.v104.i03>.
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Authors@R: c(
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person(family = "Berends", c("Matthijs", "S."), role = c("aut", "cre"), comment = c(ORCID = "0000-0001-7620-1800"), email = "m.s.berends@umcg.nl"),
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person(family = "Souverein", c("Dennis"), role = c("aut", "ctb"), comment = c(ORCID = "0000-0003-0455-0336")),
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person(family = "Hassing", c("Erwin", "E.", "A."), role = c("aut", "ctb")),
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person(family = "Albers", c("Casper", "J."), role = "ths", comment = c(ORCID = "0000-0002-9213-6743")),
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person(family = "Bolton", c("Larisse"), role = "ctb", comment = c(ORCID = "0000-0001-7879-2173")),
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person(family = "Dutey-Magni", c("Peter"), role = "ctb", comment = c(ORCID = "0000-0002-8942-9836")),
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person(family = "Fonville", c("Judith", "M."), role = "ctb"),
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person(family = "Friedrich", c("Alex", "W."), role = "ths", comment = c(ORCID = "0000-0003-4881-038X")),
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person(family = "Glasner", c("Corinna"), role = "ths", comment = c(ORCID = "0000-0003-1241-1328")),
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person(family = "Hazenberg", c("Eric", "H.", "L.", "C.", "M."), role = "ctb"),
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person(family = "Knight", c("Gwen"), role = "ctb", comment = c(ORCID = "0000-0002-7263-9896")),
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person(family = "Lenglet", c("Annick"), role = "ctb", comment = c(ORCID = "0000-0003-2013-8405")),
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person(family = "Luz", c("Christian", "F."), role = c("ctb"), comment = c(ORCID = "0000-0001-5809-5995")),
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person(family = "Meijer", c("Bart", "C."), role = "ctb"),
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person(family = "Mykhailenko", c("Dmytro"), role = "ctb"),
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person(family = "Mymrikov", c("Anton"), role = "ctb"),
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person(family = "Norgan", c("Andrew", "P."), role = "ctb", comment = c(ORCID = "0000-0002-2955-2066")),
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person(family = "Ny", c("Sofia"), role = "ctb", comment = c(ORCID = "0000-0002-2017-1363")),
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person(family = "Saab", c("Matthew"), role = "ctb"),
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person(family = "Salm", c("Jonas"), role = "ctb"),
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person(family = "Sanchez", c("Javier"), role = "ctb", comment = c(ORCID = "0000-0003-2605-8094")),
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person(family = "Schade", c("Rogier", "P."), role = "ctb"),
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person(family = "Sinha", c("Bhanu", "N.", "M."), role = "ths", comment = c(ORCID = "0000-0003-1634-0010")),
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person(family = "Stull", c("Jason"), role = "ctb", comment = c(ORCID = "0000-0002-9028-8153")),
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person(family = "Underwood", c("Anthony"), role = "ctb", comment = c(ORCID = "0000-0002-8547-4277")),
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person(family = "Williams", c("Anita"), role = "ctb", comment = c(ORCID = "0000-0002-5295-8451")))
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person(given = c("Matthijs", "S."), family = "Berends", role = c("aut", "cre"), comment = c(ORCID = "0000-0001-7620-1800"), email = "m.s.berends@umcg.nl"),
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person(given = c("Dennis"), family = "Souverein", role = c("aut", "ctb"), comment = c(ORCID = "0000-0003-0455-0336")),
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person(given = c("Erwin", "E.", "A."), family = "Hassing", role = c("aut", "ctb")),
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person(given = c("Andrew", "P."), family = "Norgan", role = "ctb", comment = c(ORCID = "0000-0002-2955-2066")),
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person(given = c("Anita"), family = "Williams", role = "ctb", comment = c(ORCID = "0000-0002-5295-8451")),
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person(given = c("Annick"), family = "Lenglet", role = "ctb", comment = c(ORCID = "0000-0003-2013-8405")),
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person(given = c("Anthony"), family = "Underwood", role = "ctb", comment = c(ORCID = "0000-0002-8547-4277")),
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person(given = c("Anton"), family = "Mymrikov", role = "ctb"),
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person(given = c("Bart", "C."), family = "Meijer", role = "ctb"),
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person(given = c("Christian", "F."), family = "Luz", role = "ctb", comment = c(ORCID = "0000-0001-5809-5995")),
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person(given = c("Dmytro"), family = "Mykhailenko", role = "ctb"),
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person(given = c("Eric", "H.", "L.", "C.", "M."), family = "Hazenberg", role = "ctb"),
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person(given = c("Gwen"), family = "Knight", role = "ctb", comment = c(ORCID = "0000-0002-7263-9896")),
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person(given = c("Jason"), family = "Stull", role = "ctb", comment = c(ORCID = "0000-0002-9028-8153")),
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person(given = c("Javier"), family = "Sanchez", role = "ctb", comment = c(ORCID = "0000-0003-2605-8094")),
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person(given = c("Jonas"), family = "Salm", role = "ctb"),
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person(given = c("Judith", "M."), family = "Fonville", role = "ctb"),
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person(given = c("Larisse"), family = "Bolton", role = "ctb", comment = c(ORCID = "0000-0001-7879-2173")),
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person(given = c("Matthew"), family = "Saab", role = "ctb"),
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person(given = c("Peter"), family = "Dutey-Magni", role = "ctb", comment = c(ORCID = "0000-0002-8942-9836")),
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person(given = c("Rogier", "P."), family = "Schade", role = "ctb"),
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person(given = c("Sofia"), family = "Ny", role = "ctb", comment = c(ORCID = "0000-0002-2017-1363")),
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person(given = c("Alex", "W."), family = "Friedrich", role = "ths", comment = c(ORCID = "0000-0003-4881-038X")),
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person(given = c("Bhanu", "N.", "M."), family = "Sinha", role = "ths", comment = c(ORCID = "0000-0003-1634-0010")),
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person(given = c("Casper", "J."), family = "Albers", role = "ths", comment = c(ORCID = "0000-0002-9213-6743")),
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person(given = c("Corinna"), family = "Glasner", role = "ths", comment = c(ORCID = "0000-0003-1241-1328")))
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Depends: R (>= 3.0.0)
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Suggests:
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cleaner,
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24
pkgdown/assets/lang_au.svg
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pkgdown/assets/lang_au.svg
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<?xml version="1.0" encoding="UTF-8"?>
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<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" width="1280" height="640" viewBox="0 0 10080 5040">
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<defs>
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<clipPath id="c1"><path d="M0,0H6V3H0z"/></clipPath>
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<clipPath id="c2"><path d="M0,0V1.5H6V3H6zM6,0H3V3H0V3z"/></clipPath>
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<path id="Star7" d="M0,-360 69.421398,-144.155019 281.459334,-224.456329 155.988466,-35.603349 350.974048,80.107536 125.093037,99.758368 156.198146,324.348792 0,160 -156.198146,324.348792 -125.093037,99.758368 -350.974048,80.107536 -155.988466,-35.603349 -281.459334,-224.456329 -69.421398,-144.155019z"/>
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<path id="Star5" d="M0,-210 54.859957,-75.508253 199.721868,-64.893569 88.765275,28.841586 123.434903,169.893569 0,93.333333 -123.434903,169.893569 -88.765275,28.841586 -199.721868,-64.893569 -54.859957,-75.508253z"/>
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</defs>
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<g transform="scale(840)">
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<rect width="12" height="6" fill="#012169"/>
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<path d="M0,0 6,3M6,0 0,3" stroke="#fff" stroke-width="0.6" clip-path="url(#c1)"/>
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<path d="M0,0 6,3M6,0 0,3" stroke="#e4002b" stroke-width="0.4" clip-path="url(#c2)"/>
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<path d="M3,0V3M0,1.5H6" stroke="#fff"/>
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<path d="M3,0V3M0,1.5H6" stroke="#e4002b" stroke-width="0.6"/>
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</g>
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<g fill="#fff">
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<use id="Comwlth" xlink:href="#Star7" transform="translate(2520, 3780) scale(2.1)"/>
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<use id="αCrucis" xlink:href="#Star7" x="7560" y="4200"/>
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<use id="βCrucis" xlink:href="#Star7" x="6300" y="2205"/>
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<use id="γCrucis" xlink:href="#Star7" x="7560" y="840"/>
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<use id="δCrucis" xlink:href="#Star7" x="8680" y="1869"/>
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<use id="εCrucis" xlink:href="#Star5" x="8064" y="2730"/>
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</g>
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</svg>
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After Width: | Height: | Size: 1.6 KiB |
5
pkgdown/assets/lang_ca.svg
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pkgdown/assets/lang_ca.svg
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<svg xmlns="http://www.w3.org/2000/svg" width="1200" height="600" viewBox="0 0 9600 4800">
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<title>Flag of Canada (Pantone colours)</title>
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<path fill="#d52b1e" d="m0 0h2400l99 99h4602l99-99h2400v4800h-2400l-99-99h-4602l-99 99H0z"/>
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<path fill="#fff" d="m2400 0h4800v4800h-4800zm2490 4430-45-863a95 95 0 0 1 111-98l859 151-116-320a65 65 0 0 1 20-73l941-762-212-99a65 65 0 0 1-34-79l186-572-542 115a65 65 0 0 1-73-38l-105-247-423 454a65 65 0 0 1-111-57l204-1052-327 189a65 65 0 0 1-91-27l-332-652-332 652a65 65 0 0 1-91 27l-327-189 204 1052a65 65 0 0 1-111 57l-423-454-105 247a65 65 0 0 1-73 38l-542-115 186 572a65 65 0 0 1-34 79l-212 99 941 762a65 65 0 0 1 20 73l-116 320 859-151a95 95 0 0 1 111 98l-45 863z"/>
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</svg>
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After Width: | Height: | Size: 720 B |
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pkgdown/assets/lang_sa.svg
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pkgdown/assets/lang_sa.svg
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<svg xmlns="http://www.w3.org/2000/svg" width="900" height="600" viewBox="0 0 90 60">
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<title>Flag of South Africa</title>
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<defs>
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<clipPath id="t">
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<path d="m0 0 45 30L0 60z"/>
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</clipPath>
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<clipPath id="f">
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<path d="m0 0h90v60H0z"/>
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</clipPath>
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</defs>
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<path fill="#e03c31" d="m0 0h90v30H45z"/>
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<path fill="#001489" d="m0 60h90V30H45z"/>
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<g clip-path="url(#f)" fill="none">
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<path stroke="#fff" stroke-width="20" d="m90 30H45L0 0v60l45-30"/>
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<path fill="#000" stroke="#ffb81c" stroke-width="20" clip-path="url(#t)" d="m0 0 45 30L0 60"/>
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<path stroke="#007749" stroke-width="12" d="m0 0 45 30h45M0 60l45-30"/>
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</g>
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</svg>
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After Width: | Height: | Size: 646 B |
1
pkgdown/assets/lang_us.svg
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pkgdown/assets/lang_us.svg
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@ -0,0 +1 @@
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<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" width="1235" height="650" viewBox="0 0 7410 3900"><path d="M0,0h7410v3900H0" fill="#b31942"/><path d="M0,450H7410m0,600H0m0,600H7410m0,600H0m0,600H7410m0,600H0" stroke="#FFF" stroke-width="300"/><path d="M0,0h2964v2100H0" fill="#0a3161"/><g fill="#FFF"><g id="s18"><g id="s9"><g id="s5"><g id="s4"><path id="s" d="M247,90 317.534230,307.082039 132.873218,172.917961H361.126782L176.465770,307.082039z"/><use xlink:href="#s" y="420"/><use xlink:href="#s" y="840"/><use xlink:href="#s" y="1260"/></g><use xlink:href="#s" y="1680"/></g><use xlink:href="#s4" x="247" y="210"/></g><use xlink:href="#s9" x="494"/></g><use xlink:href="#s18" x="988"/><use xlink:href="#s9" x="1976"/><use xlink:href="#s5" x="2470"/></g></svg>
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After Width: | Height: | Size: 799 B |
@ -63,6 +63,41 @@ $(document).ready(function() {
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$('img[src="../logo.svg"]').attr('src', '../logo_python.svg'); /* replace base logo */
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$('img[src="https://github.com/msberends/AMR/raw/main/pkgdown/assets/AMRforRGPT.svg"]').attr('src', 'https://github.com/msberends/AMR/raw/main/pkgdown/assets/AMRforRGPT_python.svg'); /* replace GPT logo */
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}
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// add country flags
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function country_flag(x) {
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if (typeof(x) != "undefined") {
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x = x.replace("Alex", '<img src="lang_de.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Alex');
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x = x.replace("Andrew", '<img src="lang_us.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Andrew');
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x = x.replace("Anita", '<img src="lang_au.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Anita');
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x = x.replace("Annick", '<img src="lang_nl.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Annick');
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x = x.replace("Anthony", '<img src="lang_en.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Anthony');
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x = x.replace("Anton", '<img src="lang_uk.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Anton');
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x = x.replace("Bart", '<img src="lang_nl.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Bart');
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x = x.replace("Bhanu", '<img src="lang_nl.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Bhanu');
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x = x.replace("Casper", '<img src="lang_nl.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Casper');
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x = x.replace("Christian", '<img src="lang_de.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Christian');
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x = x.replace("Corinna", '<img src="lang_nl.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Corinna');
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x = x.replace("Dennis", '<img src="lang_nl.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Dennis');
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x = x.replace("Dmytro", '<img src="lang_uk.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Dmytro');
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x = x.replace("Eric", '<img src="lang_nl.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Eric');
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x = x.replace("Erwin", '<img src="lang_nl.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Erwin');
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x = x.replace("Gwen", '<img src="lang_en.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Gwen');
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x = x.replace("Jason", '<img src="lang_ca.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Jason');
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x = x.replace("Javier", '<img src="lang_ca.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Javier');
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x = x.replace("Jonas", '<img src="lang_de.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Jonas');
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x = x.replace("Judith", '<img src="lang_nl.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Judith');
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x = x.replace("Larisse", '<img src="lang_sa.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Larisse');
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x = x.replace("Matthew", '<img src="lang_ca.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Matthew');
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x = x.replace("Matthijs", '<img src="lang_nl.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Matthijs');
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x = x.replace("Peter", '<img src="lang_en.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Peter');
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x = x.replace("Rogier", '<img src="lang_nl.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Rogier');
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x = x.replace("Sofia", '<img src="lang_sv.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Sofia');
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}
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return(x);
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}
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$(".template-authors").html(country_flag($(".template-authors").html()));
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$(".template-citation-authors").html(country_flag($(".template-citation-authors").html()));
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// add doctoral titles to authors
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function doct_tit(x) {
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