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@@ -370,20 +370,20 @@ Breakpoints are currently implemented from EUCAST 2011-2026 and CLSI 2011-2026,
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># IPM <sir>, MEM <sir>, MTR <sir>, CHL <sir>, COL <sir>, MUP <sir>, …</span></span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/summary.html" class="external-link">summary</a></span><span class="op">(</span><span class="va">example_isolates</span><span class="op">[</span>, <span class="fl">1</span><span class="op">:</span><span class="fl">10</span><span class="op">]</span><span class="op">)</span> <span class="co"># see all SIR results at a glance</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> date patient age gender </span>
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<span class="r-out co"><span class="r-pr">#></span> Min. :2002-01-02 Length:2000 Min. : 0.00 Length:2000 </span>
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<span class="r-out co"><span class="r-pr">#></span> 1st Qu.:2005-07-31 Class :character 1st Qu.:63.00 Class :character </span>
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<span class="r-out co"><span class="r-pr">#></span> Median :2009-07-31 Mode :character Median :74.00 Mode :character </span>
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<span class="r-out co"><span class="r-pr">#></span> Mean :2009-11-20 Mean :70.69 </span>
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<span class="r-out co"><span class="r-pr">#></span> 3rd Qu.:2014-05-30 3rd Qu.:82.00 </span>
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<span class="r-out co"><span class="r-pr">#></span> Max. :2017-12-28 Max. :97.00 </span>
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<span class="r-out co"><span class="r-pr">#></span> ward mo PEN </span>
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<span class="r-out co"><span class="r-pr">#></span> Length:2000 Class :mo Class:sir </span>
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<span class="r-out co"><span class="r-pr">#></span> Class :character <NA> :0 %S :25.6% (n=417) </span>
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<span class="r-out co"><span class="r-pr">#></span> Mode :character Unique:90 %SDD : 0.0% (n=0) </span>
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<span class="r-out co"><span class="r-pr">#></span> #1 :B_ESCHR_COLI %I : 0.7% (n=11) </span>
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<span class="r-out co"><span class="r-pr">#></span> #2 :B_STPHY_CONS %R :73.7% (n=1201) </span>
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<span class="r-out co"><span class="r-pr">#></span> #3 :B_STPHY_AURS %NI : 0.0% (n=0) </span>
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<span class="r-out co"><span class="r-pr">#></span> date patient age gender </span>
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<span class="r-out co"><span class="r-pr">#></span> Min. :2002-01-02 Length :2000 Min. : 0.00 Length :2000 </span>
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<span class="r-out co"><span class="r-pr">#></span> 1st Qu.:2005-07-31 N.unique : 981 1st Qu.:63.00 N.unique : 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> Median :2009-07-31 N.blank : 0 Median :74.00 N.blank : 0 </span>
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<span class="r-out co"><span class="r-pr">#></span> Mean :2009-11-20 Min.nchar: 6 Mean :70.69 Min.nchar: 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> 3rd Qu.:2014-05-30 Max.nchar: 6 3rd Qu.:82.00 Max.nchar: 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> Max. :2017-12-28 Max. :97.00 </span>
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<span class="r-out co"><span class="r-pr">#></span> ward mo PEN </span>
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<span class="r-out co"><span class="r-pr">#></span> Length :2000 Class :mo Class:sir </span>
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<span class="r-out co"><span class="r-pr">#></span> N.unique : 3 <NA> :0 %S :25.6% (n=417) </span>
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<span class="r-out co"><span class="r-pr">#></span> N.blank : 0 Unique:90 %SDD : 0.0% (n=0) </span>
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<span class="r-out co"><span class="r-pr">#></span> Min.nchar: 3 #1 :B_ESCHR_COLI %I : 0.7% (n=11) </span>
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<span class="r-out co"><span class="r-pr">#></span> Max.nchar: 10 #2 :B_STPHY_CONS %R :73.7% (n=1201) </span>
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<span class="r-out co"><span class="r-pr">#></span> #3 :B_STPHY_AURS %NI : 0.0% (n=0) </span>
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<span class="r-out co"><span class="r-pr">#></span> OXA FLC AMX </span>
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<span class="r-out co"><span class="r-pr">#></span> Class:sir Class:sir Class:sir </span>
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<span class="r-out co"><span class="r-pr">#></span> %S :68.8% (n=251) %S :70.5% (n=665) %S :40.2% (n=543) </span>
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@@ -424,10 +424,10 @@ Breakpoints are currently implemented from EUCAST 2011-2026 and CLSI 2011-2026,
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># A tibble: 4 × 18</span></span>
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<span class="r-out co"><span class="r-pr">#></span> datetime index method ab_given mo_given host_given input_given</span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494; font-style: italic;"><dttm></span> <span style="color: #949494; font-style: italic;"><int></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><chr></span> </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">1</span> 2026-04-24 <span style="color: #949494;">22:41:17</span> 1 MIC amoxicillin Escherich… human 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">2</span> 2026-04-24 <span style="color: #949494;">22:41:17</span> 1 MIC cipro Escherich… human 0.256 </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">3</span> 2026-04-24 <span style="color: #949494;">22:41:18</span> 1 DISK tobra Escherich… human 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">4</span> 2026-04-24 <span style="color: #949494;">22:41:18</span> 1 DISK genta Escherich… human 18 </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">1</span> 2026-04-25 <span style="color: #949494;">12:45:43</span> 1 MIC amoxicillin Escherich… human 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">2</span> 2026-04-25 <span style="color: #949494;">12:45:43</span> 1 MIC cipro Escherich… human 0.256 </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">3</span> 2026-04-25 <span style="color: #949494;">12:45:44</span> 1 DISK tobra Escherich… human 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">4</span> 2026-04-25 <span style="color: #949494;">12:45:44</span> 1 DISK genta Escherich… human 18 </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># ℹ 11 more variables: ab <ab>, mo <mo>, host <chr>, input <chr>,</span></span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># outcome <sir>, notes <chr>, guideline <chr>, ref_table <chr>, uti <lgl>,</span></span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># breakpoint_S_R <chr>, site <chr></span></span>
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