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(v2.1.1.9198) support eucast expert rules 14 and 13.1

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dr. M.S. (Matthijs) Berends
2025-03-14 10:10:35 +01:00
parent eafe9bd113
commit e134e01418
34 changed files with 604 additions and 175 deletions
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8
R/amr_selectors.R
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@ -290,10 +290,10 @@ carbapenems <- function(only_sir_columns = FALSE, only_treatable = TRUE, return_
#' @rdname antimicrobial_selectors
#' @export
cephalosporins <- function(only_sir_columns = FALSE, return_all = TRUE, ...) {
cephalosporins <- function(only_sir_columns = FALSE, only_treatable = TRUE, return_all = TRUE, ...) {
meet_criteria(only_sir_columns, allow_class = "logical", has_length = 1)
meet_criteria(return_all, allow_class = "logical", has_length = 1)
amr_select_exec("cephalosporins", only_sir_columns = only_sir_columns, return_all = return_all)
amr_select_exec("cephalosporins", only_sir_columns = only_sir_columns, only_treatable = only_treatable, return_all = return_all)
}
#' @rdname antimicrobial_selectors
@ -314,10 +314,10 @@ cephalosporins_2nd <- function(only_sir_columns = FALSE, return_all = TRUE, ...)
#' @rdname antimicrobial_selectors
#' @export
cephalosporins_3rd <- function(only_sir_columns = FALSE, return_all = TRUE, ...) {
cephalosporins_3rd <- function(only_sir_columns = FALSE, only_treatable = TRUE, return_all = TRUE, ...) {
meet_criteria(only_sir_columns, allow_class = "logical", has_length = 1)
meet_criteria(return_all, allow_class = "logical", has_length = 1)
amr_select_exec("cephalosporins_3rd", only_sir_columns = only_sir_columns, return_all = return_all)
amr_select_exec("cephalosporins_3rd", only_sir_columns = only_sir_columns, only_treatable = only_treatable, return_all = return_all)
}
#' @rdname antimicrobial_selectors