P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-11 06:21:56 +02:00
Code Releases Activity

unit testing R4.3

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2023-05-26 20:37:00 +02:00
parent 766db4e21f
commit e1966503ee
10 changed files with 20 additions and 17 deletions
Download Patch File Download Diff File Expand all files Collapse all files

5
man/add_custom_microorganisms.Rd
View File

@ -52,7 +52,8 @@ Use \code{\link[=clear_custom_microorganisms]{clear_custom_microorganisms()}} to
\examples{
\donttest{
# a combination of species is not formal taxonomy, so
# this will result in only "Enterobacter asburiae":
# this will result in "Enterobacter cloacae cloacae",
# since it resembles the input best:
mo_name("Enterobacter asburiae/cloacae")
# now add a custom entry - it will be considered by as.mo() and
@ -90,7 +91,7 @@ add_custom_microorganisms(
mo_name("BACTEROIDES / PARABACTEROIDES")
mo_rank("BACTEROIDES / PARABACTEROIDES")
# taxonomy still works, although a slashline genus was given as input:
# taxonomy still works, even though a slashline genus was given as input:
mo_family("Bacteroides/Parabacteroides")