diff --git a/DESCRIPTION b/DESCRIPTION index 0cea5e2bc..b1eef8f3b 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,5 +1,5 @@ Package: AMR -Version: 3.0.1.9118 +Version: 3.0.1.9119 Date: 2026-10-11 Title: Antimicrobial Resistance Data Analysis Description: Functions to simplify and standardise antimicrobial resistance (AMR) diff --git a/NEWS.md b/NEWS.md index e43c93b75..b83d96590 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,4 +1,4 @@ -# AMR 3.0.1.9118 +# AMR 3.0.1.9119 Planned as v3.1.0, mid October 2026. diff --git a/R/sir_combine.R b/R/sir_combine.R index 7897728f6..98a6bf012 100644 --- a/R/sir_combine.R +++ b/R/sir_combine.R @@ -92,12 +92,13 @@ #' } #' if (require("dplyr")) { #' # use the new variable in further analyses +#' # THOUGH CONSIDER wisca() FOR RELIABLE ESTIMATES #' example_isolates %>% #' mutate(TZP_GEN = sir_combine(TZP, GEN)) %>% #' group_by(ward) %>% #' summarise( -#' TZP = susceptibility(TZP), -#' GEN = susceptibility(GEN), +#' TZP_mono = susceptibility(TZP), +#' GEN_mono = susceptibility(GEN), #' TZP_GEN = susceptibility(TZP_GEN), #' # or directly, without combining first: #' TZP_GEN2 = susceptibility(TZP, GEN) diff --git a/man/sir_combine.Rd b/man/sir_combine.Rd index b65d6cb26..9a1a98c69 100644 --- a/man/sir_combine.Rd +++ b/man/sir_combine.Rd @@ -81,12 +81,13 @@ if (require("dplyr")) { } if (require("dplyr")) { # use the new variable in further analyses + # THOUGH CONSIDER wisca() FOR RELIABLE ESTIMATES example_isolates \%>\% mutate(TZP_GEN = sir_combine(TZP, GEN)) \%>\% group_by(ward) \%>\% summarise( - TZP = susceptibility(TZP), - GEN = susceptibility(GEN), + TZP_mono = susceptibility(TZP), + GEN_mono = susceptibility(GEN), TZP_GEN = susceptibility(TZP_GEN), # or directly, without combining first: TZP_GEN2 = susceptibility(TZP, GEN)