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(v2.1.1.9193) new antimicrobials for screening
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"BNB" "Benzathine benzylpenicillin" "Beta-lactams/penicillins" "J01CE08" "Beta-lactam antibacterials, penicillins" "Beta-lactamase sensitive penicillins" "" "beacillin,cepacilina,extencilline,lentopenil,penidural,tardocillin" 3.6 "g" ""
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"BNP" 64725 "Benzathine phenoxymethylpenicillin" "Beta-lactams/penicillins" "J01CE10" "Beta-lactam antibacterials, penicillins" "Beta-lactamase sensitive penicillins" "" "bicillinv,biphecillin" 2 "g" ""
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"PEN" 5904 "Benzylpenicillin" "Beta-lactams/penicillins" "J01CE01,S01AA14" "Combinations of antibacterials" "Combinations of antibacterials" "bepe,pen,peni,peni g,penicillin,penicillin g,pg" "abbocillin,ayercillin,bencilpenicilina,benzopenicillin,benzylpenicilline,benzylpenicilling,benzylpenicillinum,bicillin,cillora,cilloral,cilopen,compocilling,cosmopen,dropcillin,freepenicilling,freepenicillinii,galofak,gelacillin,liquacillin,megacillin,pencilling,penicillin,penicilling,pentids,permapen,pfizerpen,pfizerpeng,pharmacillin,pradupen,specillineg,ursopen" 3.6 "g" ""
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"PEN-S" "Benzylpenicillin screening test" "Beta-lactams/penicillins" "NA" "pen screen" "" ""
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"BES" 10178705 "Besifloxacin" "Fluoroquinolones" "S01AE08" "" "besivance" "73606-6,73628-0,73651-2"
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"BIA" 71339 "Biapenem" "Carbapenems" "J01DH05" "" "biapenern,bipenem,omegacin" 1.2 "g" "41665-1,41666-9,41667-7,41728-7"
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"BCZ" 65807 "Bicyclomycin" "Other antibacterials" "NA" "bicozamycin" "aizumycin,bacfeed,bacteron,bicozamicina,bicozamycin,bicozamycine,bicozamycinum" ""
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@ -90,14 +91,14 @@
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"CND" 43507 "Ceforanide" "Cephalosporins (2nd gen.)" "J01DC11" "Other beta-lactam antibacterials" "Second-generation cephalosporins" "" "ceforanido,ceforanidum,precef,radacef" 4 "g" "103-2,104-0,105-7,106-5,18885-4,55643-1"
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"CSE" 9830519 "Cefoselis" "Cephalosporins (4th gen.)" "NA" "" "cefoselissulfate,wincef,winsef" ""
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"CTX" 5742673 "Cefotaxime" "Cephalosporins (3rd gen.)" "J01DD01" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "cfot,cft,cftx,ct,ctx,fot,tax,xct" "cefotaxim,cefotaxima,cefotaximaacid,cefotaximeacid,cefotaximhikma,cefotaximum,cephotaxime,claforan,omnatax" 4 "g" "101479-4,101480-2,107-3,108-1,109-9,110-7,18886-2,25238-7,31138-1,31139-9,3446-2,35769-9,35770-7,35771-5,41671-9,50632-9,52128-6,54191-2,54192-0,54193-8,55189-5,55644-9,6989-8,80961-6"
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"CTC" 9575353 "Cefotaxime/clavulanic acid" "Cephalosporins (3rd gen.)" "NA,J01DD51" "cxcl,xctl" "" ""
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"CTC" 9575353 "Cefotaxime/clavulanic acid" "Cephalosporins (3rd gen.)" "J01DD51" "cxcl,xctl" "" ""
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"CTS" 9574753 "Cefotaxime/sulbactam" "Cephalosporins (3rd gen.)" "NA" "" "" "54191-2,54192-0,54193-8,55644-9"
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"CTT" 53025 "Cefotetan" "Cephalosporins (2nd gen.)" "J01DC05" "Other beta-lactam antibacterials" "Second-generation cephalosporins" "cftt,cn,cte,ctn,ctt,tans" "apacef,cefotan,cefotetanacid,cefotetanfreeacid,cefotetanum" 4 "g" "111-5,112-3,113-1,114-9,18887-0,25239-5,3447-0,41672-7,41673-5,41674-3,41729-5,6990-6"
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"CTF" 43708 "Cefotiam" "Cephalosporins (2nd gen.)" "J01DC07" "Other beta-lactam antibacterials" "Second-generation cephalosporins" "" "cefotiamum,ceradolan,ceradon,haloapor" 1.2 "g" 4 "g" "32374-1,35772-3,35773-1,55645-6,55737-1,55738-9,55739-7,55740-5"
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"CHE" 125846 "Cefotiam hexetil" "Cephalosporins (3rd gen.)" "NA" "" "cefotiamcilexetil,pansporint" "55737-1,55738-9,55739-7,55740-5"
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"FOV" 9578573 "Cefovecin" "Cephalosporins (3rd gen.)" "QJ01DD91" "" "" "76147-8,87792-8"
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"FOX" 441199 "Cefoxitin" "Cephalosporins (2nd gen.)" "J01DC01" "Other beta-lactam antibacterials" "Second-generation cephalosporins" "cfox,cfx,cfxt,cx,fox,fx" "cefoxitina,cefoxitine,cefoxitinum,cefoxotin,cenomycin,cephoxitin,mefoxin,mefoxitin,rephoxitin" 6 "g" "101492-7,115-6,116-4,117-2,118-0,18888-8,25220-5,25240-3,25366-6,3448-8,41675-0,41676-8,41677-6,41730-3,6991-4"
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"FOX1" "Cefoxitin screening" "Cephalosporins (2nd gen.)" "NA" "cfsc" "" ""
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"FOX-S" "Cefoxitin screening test" "Cephalosporins (2nd gen.)" "NA" "cfsc,fox1" "" ""
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"ZOP" 9571080 "Cefozopran" "Cephalosporins (4th gen.)" "J01DE03" "" "" 4 "g" "100045-4,53820-7"
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"CFZ" 68597 "Cefpimizole" "Cephalosporins (3rd gen.)" "NA" "" "cefpimizol,cefpimizolesodium,cefpimizolum" ""
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"CPM" 636405 "Cefpiramide" "Cephalosporins (3rd gen.)" "J01DD11" "Other beta-lactam antibacterials" "Third-generation cephalosporins" "" "cefpiramideacid,cefpiramido,cefpiramidum" 2 "g" ""
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@ -146,7 +147,7 @@
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"CLA1" 5280980 "Clavulanic acid" "Other antibacterials" "NA" "" "acideclavulanique,acidoclavulanico,acidumclavulanicum,clavulanate,clavulanateacid,clavulanatelithium,clavulanicacid,clavulansaeure,clavulansaure,clavulinicacid,clavulox,serdaxin,sodiumclavulanate" ""
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"CLX" 60063 "Clinafloxacin" "Fluoroquinolones" "NA" "" "" "32376-6,33284-1,35785-5,35786-3,7004-5"
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"CLI" 446598 "Clindamycin" "Macrolides/lincosamides" "D10AF01,G01AA10,J01FF01" "Macrolides, lincosamides and streptogramins" "Lincosamides" "cc,cd,cli,clin,cm,da" "antirobe,chlolincocin,clindaderm,clindamicina,clindamycine,clindamycinum,clinimycin,dalacinc,dalacine,klimicin,sobelin" 1.2 "g" 1.8 "g" "16621-5,16622-3,18908-4,192-5,193-3,194-1,195-8,25249-4,3486-8,42720-3,55657-1,55658-9,55659-7,55660-5,61188-9,7005-2"
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"CLI1" "Clindamycin inducible screening" "Macrolides/lincosamides" "NA" "clin inducible,clinda inducible,clindamycin inducible" "" ""
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"CLI-S" "Clindamycin inducible screening test" "Macrolides/lincosamides" "NA" "clin inducible,clinda inducible,clindamycin inducible" "" ""
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"CLF" 2794 "Clofazimine" "Antimycobacterials" "J04BA01" "Drugs for treatment of lepra" "Drugs for treatment of lepra" "clof" "chlofazimine,clofazimin,clofazimina,clofaziminum,colfazimine,lampren,lamprene,riminophenazine" 0.1 "g" "16623-1,20376-0,23620-8,23627-3,43986-9,43988-5,43989-3,55661-3,55662-1,96108-6"
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"CLF1" 2799 "Clofoctol" "Other antibacterials" "J01XX03" "Other antibacterials" "Other antibacterials" "" "clofoctolo,clofoctolum,gramplus,octofene" ""
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"CLM" 71807 "Clometocillin" "Beta-lactams/penicillins" "J01CE07" "Beta-lactam antibacterials, penicillins" "Beta-lactamase sensitive penicillins" "" "chlomethocillin,clometacillin,clometocilina,clometocilline,clometocillinum,rixapen" 1 "g" ""
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@ -221,7 +222,7 @@
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"ICL" 213043 "Iclaprim" "Other antibacterials" "J01EA03" "" "mersarex" "73597-7,73619-9,73642-1"
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"IPM" 104838 "Imipenem" "Carbapenems" "J01DH51" "Other beta-lactam antibacterials" "Carbapenems" "imci,imi,imip,imp" "imipemide,imipenemanhydrous,imipenemcilastatin,imipenemhydrate,imipenemum,imipenen,primaxin,recarbrio,tienamycin" 2 "g" "101487-7,17010-0,18932-4,18933-2,23613-3,25221-3,25257-7,27331-8,278-2,279-0,280-8,281-6,282-4,283-2,284-0,285-7,35819-2,3688-9,54170-6,54171-4,54172-2,7019-3,85424-0,93232-7,96372-8"
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"IPE" "Imipenem/EDTA" "Carbapenems" "NA" "" "" "35819-2,54170-6,54171-4,54172-2"
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"IMR" "Imipenem/relebactam" "Carbapenems" "NA,J01DH56" "" "" 2 "g" "85424-0,93232-7,96372-8"
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"IMR" "Imipenem/relebactam" "Carbapenems" "J01DH56" "" "" 2 "g" "85424-0,93232-7,96372-8"
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"ISV" 6918485 "Isavuconazole" "Antifungals/antimycotics" "J02AC05" "isav" "" 0.2 "g" 0.2 "g" "85381-2,88887-5"
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"ISE" 3037209 "Isepamicin" "Aminoglycosides" "J01GB11" "Aminoglycoside antibacterials" "Other aminoglycosides" "" "isepacin,isepalline,isepamicina,isepamicine,isepamicinsulphate,isepamicinum" 0.4 "g" "32381-6,35820-0,35821-8,55680-3"
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"ISO" 3760 "Isoconazole" "Antifungals/antimycotics" "D01AC05,G01AF07" "Antimycotics for topic use" "Triazole derivatives" "" "isoconazol,isoconazolum,travogen" "55681-1,55682-9,55683-7,55684-5"
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"LMU" 25185057 "Lefamulin" "Other antibacterials" "J01XX12" "" "xenleta" "85425-7,99281-8"
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"LEN" 65646 "Lenampicillin" "Beta-lactams/penicillins" "NA" "" "lenampicilina,lenampicilline,lenampicillinhcl,lenampicillinum" ""
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"LVX" 149096 "Levofloxacin" "Fluoroquinolones" "J01MA12,S01AE05" "Quinolone antibacterials" "Fluoroquinolones" "le,lev,levo,lvx" "aeroquin,anhydrousofloxacin,cravit,cravithydrate,cravitiv,cravitophthalmic,elequine,floxacin,floxel,fluoroquinolone,iquixhydrate,leroxacin,lesacin,levaquin,levaquinhydrate,levofiexacin,levofloxacine,levofloxacinhydrate,levofloxacino,levofloxacinum,levokacin,levoxacin,mosardal,nofaxin,ofloxcacin,oftaquix,quinsair,quixin,reskuin,tavanic,unibiotic,venaxan,volequin" 0.5 "g" 0.5 "g" "101501-5,20396-8,20629-2,21367-8,21368-6,30532-6,30533-4,48173-9,53716-7,7026-8,76040-5,76041-3,76042-1"
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"LEO" "Levofloxacin/ornidazole" "Other antibacterials" "J01RA05" "Combinations of antibacterials" "Combinations of antibacterials" "" "" ""
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"LEO" "Levofloxacin/ornidazole" "Fluoroquinolones" "J01RA05" "Combinations of antibacterials" "Combinations of antibacterials" "" "" ""
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"LND" 9850038 "Levonadifloxacin" "Fluoroquinolones" "J01MA24" "" "" ""
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"LSP" "Linco-spectin" "Other antibacterials" "NA" "lincomycin/spectinomycin" "" ""
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"LIN" 3000540 "Lincomycin" "Macrolides/lincosamides" "J01FF02" "Macrolides, lincosamides and streptogramins" "Lincosamides" "linc" "bactramycin,cillimycin,frademicina,jiemycin,lincocin,lincolcina,lincolnensin,lincomicina,lincomycina,lincomycine,lincomycinum,lincorex" 1.8 "g" 1.8 "g" "18938-1,298-0,299-8,300-4,301-2,41700-6,87597-1"
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"NAF" 8982 "Nafcillin" "Beta-lactams/penicillins" "J01CF06" "" "nafcilina,nafcilline,nafcillinsodium,nafcillinum,nallpen,naphcillin,unipen" 3 "g" "10993-4,18951-4,25232-0,346-7,347-5,348-3,349-1,41704-8"
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"ZWK" 117587595 "Nafithromycin" "Macrolides/lincosamides" "NA" "" "" ""
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"NAL" 4421 "Nalidixic acid" "Quinolones" "J01MB02" "Quinolone antibacterials" "Other quinolones" "na,nal,nali" "acidenalidixico,acidenalidixique,acidonalidissico,acidonalidixico,acidumnalidixicum,betaxina,dixiben,dixinal,eucisten,eucistin,innoxalomn,innoxalon,jicsron,kusnarin,naldixicacid,nalidicacid,nalidicron,nalidixan,nalidixane,nalidixate,nalidixatesodium,nalidixic,nalidixicacid,nalidixin,nalidixinicacid,nalidixinsaure,nalitucsan,nalurin,narigix,naxuril,neggram,negram,nevigramon,nicelate,nogram,poleon,sicmylon,specifen,specifin,unaserus,uralgin,uriben,uriclar,urisal,urodixin,uroman,uroneg,uronidix,uropan,wintomylon,wintron" 4 "g" ""
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"NAL-S" "Nalidixic acid screening test" "Quinolones" "NA" "nal screen" "" ""
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"NAR" 65452 "Narasin" "Other antibacterials" "QP51BB04" "" "monteban,narasina,narasine,narasino,narasinum,narasul" "87570-8"
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"NEM" 11993740 "Nemonoxacin" "Fluoroquinolones" "J01MB08" "Quinolone antibacterials" "Other quinolones" "" "" ""
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"NEO" 8378 "Neomycin" "Aminoglycosides" "A01AB08,A07AA01,B05CA09,D06AX04,J01GB05,R02AB01,S01AA03,S02AA07,S03AA01" "Aminoglycoside antibacterials" "Other aminoglycosides" "neom" "actilin,actiline,antibiotique,bycomycin,dekamyciniii,endomixin,enterfram,fradiomycin,fradiomycinb,fradiomycinum,framicetina,framidal,framycetine,framycetinsulfate,framycetinum,framycin,framygen,francetin,fraquinol,jernadex,myacine,myacyne,mycerin,mycifradin,neobrettin,neolate,neomas,neomcin,neomicina,neomin,neomycinb,neomycinbsulfate,neomycine,neomycinsolution,neomycinsulfate,neomycinsulphate,neomycinum,nivemycin,pimavecort,soframycin,soframycine,tuttomycin,vonamycin,vonamycinpowderv" 5 "g" 1 "g" "10995-9,18953-0,25262-7,354-1,355-8,356-6,357-4,41705-5"
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"NIZ" 5447130 "Nitrofurazone" "Other antibacterials" "NA" "" "acutol,aldomycin,alfucin,amifur,babrocid,becafurazone,biofuracina,biofurea,chemofuran,chixin,cocafurin,coxistat,dermofural,dymazone,dynazone,eldezol,fedacin,flavazone,fracine,furacilin,furacilinum,furacillin,furacin,furacine,furacinetten,furacoccid,furacort,furacycline,furaderm,furagent,furalcyn,furaldon,furalone,furametral,furaplast,furaseptyl,furaskin,furatsilin,furaziline,furazin,furazina,furazolw,furazone,furazyme,furesol,furfurin,furosem,fuvacillin,hemofuran,ibiofural,mammex,mastofuran,monafuracin,monafuracis,monofuracin,nfzmix,nifucin,nifurid,nifuzon,nitrofural,nitrofuralum,nitrofuran,nitrofurane,nitrofurazan,nitrofurazonum,nitrofurol,nitrozone,otofural,otofuran,rivafurazon,sanfuran,vabrocid,vadrocid,yatrocin" "20388-5,87793-6"
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"NTR" 19910 "Nitroxoline" "Fluoroquinolones" "J01XX07" "Other antibacterials" "Other antibacterials" "" "galinok,isinok,nibiol,niceneforte,nitroxlina,nitroxolin,nitroxolina,nitroxolinum,notroxoline,noxibiol" 1 "g" "25608-1,25723-8,32382-4,54181-3,55688-6"
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"NOR" 4539 "Norfloxacin" "Fluoroquinolones" "J01MA06,S01AE02" "Quinolone antibacterials" "Fluoroquinolones" "nor,norf,nx,nxn" "baccidal,barazan,chibroxin,chibroxine,chibroxol,fulgram,gonorcin,lexinor,nolicin,noracin,noraxin,norflo,norfloxacine,norfloxacino,norfloxacinum,norocin,noroxin,noroxine,norxacin,sebercim,uroxacin,utinor,zoroxin" 0.8 "g" "18956-3,366-5,367-3,368-1,369-9,3867-9,41504-2,7037-5"
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"NME" "Norfloxacin/metronidazole" "Other antibacterials" "J01RA14" "Combinations of antibacterials" "Combinations of antibacterials" "" "" ""
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"NTI" "Norfloxacin/tinidazole" "Other antibacterials" "J01RA13" "Combinations of antibacterials" "Combinations of antibacterials" "" "" ""
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"NOR-S" "Norfloxacin screening test" "Fluoroquinolones" "NA" "nor screen" "" ""
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"NME" "Norfloxacin/metronidazole" "Fluoroquinolones" "J01RA14" "Combinations of antibacterials" "Combinations of antibacterials" "" "" ""
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"NTI" "Norfloxacin/tinidazole" "Fluoroquinolones" "J01RA13" "Combinations of antibacterials" "Combinations of antibacterials" "" "" ""
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"NVA" 10419027 "Norvancomycin" "Glycopeptides" "NA" "" "" ""
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"NOV" 54675769 "Novobiocin" "Other antibacterials" "QJ01XX95" "novo" "albamix,albamycin,cardelmycin,cathocin,cathomycin,crystallinicacid,inamycin,novobiocina,novobiocine,novobiocinum,robiocina,sirbiocina,spheromycin,stilbiocina,streptonivicin" "17378-1,18957-1,370-7,371-5,372-3,373-1,41706-3"
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"NYS" 6433272 "Nystatin" "Antifungals/antimycotics" "A07AA02,D01AA01,G01AA01" "nyst" "biofanal,candexlotion,comycin,diastatin,herniocid,moronal,myconystatin,mycostatin,mycostatinpastilles,mykinac,mykostatyna,nilstat,nistatin,nistatina,nyamyc,nyotran,nyotrantrademark,nystaform,nystan,nystatina,nystatine,nystating,nystatinhydrate,nystatinlf,nystatinum,nystatyna,nystavescent,nystex,nystop,stamycin,terrastatin,zydine" 1.5 "MU" "10697-1,10698-9,18958-9,35824-2,55689-4"
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"OFX" 4583 "Ofloxacin" "Fluoroquinolones" "J01MA01,S01AE01,S02AA16" "Quinolone antibacterials" "Fluoroquinolones" "of,ofl,oflo,ofx" "bactocin,danoflox,dextrofloxacin,effexin,exocin,exocine,flobacin,flodemex,flotavid,flovid,floxal,floxil,floxin,floxinotic,floxstat,fugacin,inoflox,kinflocin,kinoxacin,levofloxacinhcl,liflox,loxinter,marfloxacin,medofloxine,mergexin,monoflocet,novecin,nufafloqo,occidal,ocuflox,oflocee,oflocet,oflocin,oflodal,oflodex,oflodura,ofloxacina,ofloxacine,ofloxacino,ofloxacinotic,ofloxacinum,ofloxin,onexacin,operan,orocin,otonil,oxaldin,pharflox,praxin,puiritol,qinolon,quinolon,quotavil,sinflo,tabrin,taravid,tariflox,tarivid,telbit,tructum,urotarivid,viotisone,visiren,zanocin" 0.4 "g" 0.4 "g" "18959-7,20384-4,23948-3,25264-3,374-9,375-6,376-4,377-2,3877-8,41408-6,41409-4,41410-2,42653-6,7038-3,72168-8"
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"OOR" "Ofloxacin/ornidazole" "Other antibacterials" "J01RA09" "Combinations of antibacterials" "Combinations of antibacterials" "" "" ""
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"OOR" "Ofloxacin/ornidazole" "Fluoroquinolones" "J01RA09" "Combinations of antibacterials" "Combinations of antibacterials" "" "" ""
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"OLE" 72493 "Oleandomycin" "Macrolides/lincosamides" "J01FA05" "Macrolides, lincosamides and streptogramins" "Macrolides" "" "amimycin,landomycin,matromycin,oleandomicina,oleandomycina,oleandomycine,oleandomycinum,romicil" 1 "g" "18960-5,378-0,379-8,380-6,381-4,55690-2"
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"OMC" 54697325 "Omadacycline" "Tetracyclines" "J01AA15" "" "amadacycline" 0.3 "g" 0.1 "g" "73594-4,73616-5,73639-7"
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"OPT" 87880 "Optochin" "Other antibacterials" "NA" "" "numoquin,optoquine" "100055-3,73665-2"
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"ORN" 28061 "Ornidazole" "Other antibacterials" "G01AF06,J01XD03,P01AB03" "Other antibacterials" "Imidazole derivatives" "" "madelen,ornidal,ornidazol,ornidazolum,tiberal" 1.5 "g" 1 "g" "55691-0,55692-8,55693-6,55694-4"
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"OTE" 77050711 "Oteseconazole" "Antifungals/antimycotics" "J02AC06" "Antimycotics for systemic use" "Triazole derivatives" "" "" 21 "mg" ""
|
||||
"OXA" 6196 "Oxacillin" "Beta-lactams/penicillins" "J01CF04" "Beta-lactam antibacterials, penicillins" "Beta-lactamase resistant penicillins" "ox,oxa,oxac,oxal,oxs" "bactocill,ossacillina,oxacilina,oxacilline,oxacillinsodium,oxacillinum,oxazocillin,oxazocilline,prostaphlin,prostaphlyn,sodiumoxacillin" 2 "g" 2 "g" "18961-3,25265-0,382-2,383-0,384-8,385-5,3882-8,7039-1"
|
||||
"OXA-S" "Oxacillin screening test" "Beta-lactams/penicillins" "NA" "oxa screen" "" ""
|
||||
"OXO" 4628 "Oxolinic acid" "Quinolones" "J01MB05" "Quinolone antibacterials" "Other quinolones" "" "acideoxolinique,acidoossolico,acidooxolinico,acidumoxolinicum,aqualinic,cistopax,dioxacin,emyrenil,gramurin,inoxyl,nidantin,oksaren,orthurine,ossian,oxoboi,oxolinic,oxolinicacid,pietil,prodoxal,prodoxol,starner,tiurasin,ultibid,urinox,uritrate,urotrate,uroxol,utibid" 1 "g" ""
|
||||
"OXY" 54675779 "Oxytetracycline" "Tetracyclines" "A01AB25,D06AA03,G01AA07,J01AA06,S01AA04" "Tetracyclines" "Tetracyclines" "" "adamycin,berkmycen,biostat,biostatpa,bisolvomycin,dabicycline,dalimycin,embryostat,fanterrin,galsenomycin,geomycin,geotilin,hydroxytetracyclinum,imperacin,lenocycline,macocyn,medamycin,mepatar,oksisyklin,ossitetraciclina,oxacycline,oxitetraciclina,oxitetracyclin,oxitetracycline,oxitetracyclinum,oxydon,oxymycin,oxymykoin,oxypam,oxysteclin,oxyterracin,oxyterracine,oxyterracyne,oxytetracid,oxytetracyclin,oxytetracyclinebase,oxytetracyclinum,proteroxyna,riomitsin,ryomycin,solkaciclina,stecsolin,stevacin,tarocyn,tarosin,teravit,terrafungine,terramitsin,terramycin,terramycine,terramycinim,tetran,unimycin,ursocyclin,ursocycline,vendarcin" 1 "g" 1 "g" "17396-3,18962-1,25266-8,386-3,387-1,388-9,389-7,55699-3,87595-5"
|
||||
"OZN" "Ozenoxacin" "D06AX14" "" "ozadub,ozenoxacincream" ""
|
||||
"PAS" 4649 "P-aminosalicylic acid" "Antimycobacterials" "NA" "" "aminopar,aminosalicylic,aminosalicylicacid,aminosalyl,aminox,apacil,deapasil,entepas,ferrosan,gabbropas,granupas,helipidyl,hellipidyl,neopasalate,osacyl,pamacyl,pamisyl,paramycin,parasal,parasalicil,parasalindon,pasalon,pasara,pascorbic,pasdium,pasergranules,paskalium,pasmed,pasnodia,pasolac,propasa,rezipas,teebacin" ""
|
||||
"PAN" 72015 "Panipenem" "Carbapenems" "NA,J01DH55" "" "panipenembetamipron,panipenemum,penipanem" 2 "g" "100056-1,53823-1"
|
||||
"PAN" 72015 "Panipenem" "Carbapenems" "J01DH55" "" "panipenembetamipron,panipenemum,penipanem" 2 "g" "100056-1,53823-1"
|
||||
"PAR" 165580 "Paromomycin" "Other antibacterials" "A07AA06" "" "aminosidin,aminosidine,aminosidinei,aminosidinesulfate,amminosidin,crestomycin,estomycin,gabbromicina,gabbromycin,gabromycin,humatin,humycin,hydroxymycin,hydroxymycinsulfate,monomycin,monomycina,neomycine,paramomycin,paramomycinsulfate,paromomicina,paromomycine,paromomycini,paromomycinum,paucimycin,paucimycinum,quintomycinc" 3 "g" "51719-3,53824-9,55700-9,55701-7,55702-5"
|
||||
"PAZ" 65957 "Pazufloxacin" "Fluoroquinolones" "J01MA18" "Quinolone antibacterials" "Fluoroquinolones" "" "pazufloxacine,pazufloxacino,pazufloxacinum" 1 "g" ""
|
||||
"PEF" 51081 "Pefloxacin" "Fluoroquinolones" "J01MA03" "Quinolone antibacterials" "Fluoroquinolones" "pefl" "abactal,labocton,pefloxacine,pefloxacinium,pefloxacino,pefloxacinum,perfloxacin,silverpefloxacin" 0.8 "g" 0.8 "g" "18963-9,35828-3,390-5,3906-5,7040-9"
|
||||
"PEF-S" "Pefloxacin screening test" "Fluoroquinolones" "NA" "pef screen" "" ""
|
||||
"PNM" 10250769 "Penamecillin" "Beta-lactams/penicillins" "J01CE06" "Beta-lactam antibacterials, penicillins" "Beta-lactamase sensitive penicillins" "" "hydroxymethyl,penamecilina,penamecillina,penamecilline,penamecillinum" 1.05 "g" ""
|
||||
"PNO" "Penicillin/novobiocin" "Beta-lactams/penicillins" "NA" "" "" "35872-1,35873-9,35874-7"
|
||||
"PSU" "Penicillin/sulbactam" "Beta-lactams/penicillins" "NA" "" "" ""
|
||||
@ -436,7 +441,7 @@
|
||||
"TAL" 71447 "Talampicillin" "Beta-lactams/penicillins" "J01CA15" "Beta-lactam antibacterials, penicillins" "Penicillins with extended spectrum" "" "talampicilina,talampicilline,talampicillinum" 2 "g" "18988-6,479-6,480-4,481-2,482-0"
|
||||
"TLP" 163307 "Talmetoprim" "Other antibacterials" "NA" "" "" ""
|
||||
"TAZ" 123630 "Tazobactam" "Beta-lactams/penicillins" "J01CG02" "Beta-lactam antibacterials, penicillins" "Beta-lactamase inhibitors" "tazo" "tazobactamacid,tazobactamum,tazobactum" "41719-6,41720-4,41721-2,41740-2"
|
||||
"TBP" 9800194 "Tebipenem" "Carbapenems" "NA,J01DH06" "" "tebipenempivoxil" 0.56 "g" ""
|
||||
"TBP" 9800194 "Tebipenem" "Carbapenems" "J01DH06" "" "tebipenempivoxil" 0.56 "g" ""
|
||||
"TZD" 11234049 "Tedizolid" "Oxazolidinones" "J01XX11" "Other antibacterials" "Other antibacterials" "tedi" "sivextro,torezolid" 0.2 "g" 0.2 "g" "73586-0,73608-2,73631-4"
|
||||
"TEC" 16131923 "Teicoplanin" "Glycopeptides" "J01XA02" "Other antibacterials" "Glycopeptide antibacterials" "tec,tei,teic,tp,tpl,tpn" "targocid,tecoplanina,tecoplanine,tecoplaninum,teichomycin,teicoplanina,teicoplanine,teicoplaninum" 0.4 "g" "18989-4,25534-9,25535-6,34378-0,34379-8,4043-6,483-8,484-6,485-3,486-1,7051-6,80968-1"
|
||||
"TCM" "Teicoplanin-macromethod" "Glycopeptides" "NA" "" "" ""
|
||||
@ -448,6 +453,7 @@
|
||||
"TRC" 441383 "Terconazole" "Antifungals/antimycotics" "G01AG02" "" "fungistat,panlomyc,terazol,terconazol,terconazolum,tercospor,triaconazole,zazole" "55196-0"
|
||||
"TRZ" 65720 "Terizidone" "Antimycobacterials" "J04AK03" "Drugs for treatment of tuberculosis" "Other drugs for treatment of tuberculosis" "" "terivalidin,terizidon,terizidona,terizidonum" ""
|
||||
"TCY" 54675776 "Tetracycline" "Tetracyclines" "A01AB13,D06AA04,J01AA07,S01AA09,S02AA08,S03AA02" "Tetracyclines" "Tetracyclines" "tc,te,tet,tetr" "abramycin,abricycline,achromycin,achromycinv,actisite,agromicina,ambramicina,ambramycin,amycin,biocycline,bristaciclin,bristaciclina,bristacycline,brodspec,cefracycline,centet,ciclibion,copharlan,criseociclina,cyclomycin,cyclopar,cytome,democracin,deschlorobiomycin,dumocyclin,economycin,enterocycline,hostacyclin,lexacycline,limecycline,liquamycin,medocycline,mericycline,micycline,neocycline,oletetrin,omegamycin,orlycycline,panmycin,piracaps,polycycline,polyotic,purocyclina,resteclin,robitet,roviciclina,sigmamycin,solvocin,sumycin,sumycinsyrup,supramycin,sustamycin,tetrabidorganon,tetrabon,tetrachel,tetraciclina,tetracycl,tetracyclin,tetracyclinebase,tetracyclinehydrate,tetracyclinei,tetracyclineii,tetracyclinum,tetracyn,tetradecin,tetrafil,tetramed,tetrasure,tetraverine,tetrazyklin,tetrex,topicycline,tsiklomistsin,tsiklomitsin,veracin,vetacyclinum,vetquamycin" 1 "g" 1 "g" "101504-9,18993-6,25272-6,4045-1,495-2,496-0,497-8,498-6,7052-4,87590-6"
|
||||
"TCY-S" "Tetracycline screening test" "Tetracyclines" "NA" "tcy screen" "" ""
|
||||
"TOL" 54691494 "Tetracycline/oleandomycin" "Other antibacterials" "J01RA08" "Combinations of antibacterials" "Combinations of antibacterials" "" "" ""
|
||||
"TET" 65450 "Tetroxoprim" "Other antibacterials" "NA" "" "tetroxoprima,tetroxoprime,tetroxoprimum" ""
|
||||
"THA" 9568512 "Thiacetazone" "Oxazolidinones" "NA" "" "aktivan,ambathizon,amithiozone,amithizone,amitiozon,benthiozone,benzothiozane,benzothiozon,berculona,berkazon,citazone,conteben,diasan,diazan,domakol,ilbion,livazone,mirizoneneustab,mivizon,myvizone,neotibil,neustab,novakol,nuclonargentinian,panrone,parazone,seroden,siocarbazone,tebalon,tebecure,tebemar,tebesonei,tebethion,tebethione,tebezon,thiacetone,thiacetozone,thibon,thibone,thioacetazon,thioacetazonum,thioazetazone,thiocarbazil,thiomicid,thionicid,thioparamizon,thioparamizone,thiosemicarbarzone,thiosemicarbazone,thiotebesin,thiotebezin,thiotebicina,thizone,tiacetazon,tibicur,tibion,tibione,tibizan,tibone,tioacetazon,tioacetazona,tioatsetazon,tiobicina,tiocarone,tiosecolo,tubercazon,tubigal" "32384-0,54184-7,54204-3"
|
||||
|
||||
Binary file not shown.
@ -226,109 +226,140 @@ genus is Bacillus NOR R fluoroquinolones R Bacillus Breakpoints 11 added in 11
|
||||
order is Enterobacterales AMP S AMX S Enterobacterales (Order) Breakpoints 12
|
||||
order is Enterobacterales AMP I AMX I Enterobacterales (Order) Breakpoints 12
|
||||
order is Enterobacterales AMP R AMX R Enterobacterales (Order) Breakpoints 12
|
||||
genus is Staphylococcus PEN, FOX S betalactams_with_inhibitor S Staphylococcus Breakpoints 12
|
||||
genus is Staphylococcus PEN, FOX R, S OXA, FLC S Staphylococcus Breakpoints 12
|
||||
genus is Staphylococcus FOX R betalactams R Staphylococcus Breakpoints 12
|
||||
genus_species is Staphylococcus saprophyticus AMP S AMX, AMC, PIP, TZP S Staphylococcus Breakpoints 12
|
||||
genus is Staphylococcus FOX S carbapenems, cephalosporins_except_CAZ S Staphylococcus Breakpoints 12
|
||||
genus is Staphylococcus FOX I carbapenems, cephalosporins_except_CAZ I Staphylococcus Breakpoints 12
|
||||
genus is Staphylococcus FOX R carbapenems, cephalosporins_except_CAZ R Staphylococcus Breakpoints 12
|
||||
genus is Staphylococcus NOR S MFX S Staphylococcus Breakpoints 12
|
||||
genus is Staphylococcus NOR S CIP, LVX I Staphylococcus Breakpoints 12
|
||||
genus is Staphylococcus NOR R MFX, CIP, LVX R Staphylococcus Breakpoints 12
|
||||
order is Enterobacterales LEX S CZO I Enterobacterales (Order) Breakpoints 12
|
||||
order is Enterobacterales CFR S CZO I Enterobacterales (Order) Breakpoints 12
|
||||
genus is Salmonella PEF-S S CIP S Enterobacterales (Order) Breakpoints 12
|
||||
genus is Salmonella PEF-S I CIP I Enterobacterales (Order) Breakpoints 12
|
||||
genus is Salmonella PEF-S R CIP R Enterobacterales (Order) Breakpoints 12
|
||||
genus_species is Yersinia enterocolitica TCY S DOX S Enterobacterales (Order) Breakpoints 12
|
||||
genus_species is Yersinia enterocolitica TCY I DOX I Enterobacterales (Order) Breakpoints 12
|
||||
genus_species is Yersinia enterocolitica TCY R DOX R Enterobacterales (Order) Breakpoints 12
|
||||
genus_species is Staphylococcus aureus FOX-S R penicillins R Staphylococcus Breakpoints 12 See last sentence: Isolates that test resistant to cefoxitin are resistant to all penicillins
|
||||
genus_species is Staphylococcus aureus PEN, FOX-S S, S penicillins S Staphylococcus Breakpoints 12
|
||||
genus_species is Staphylococcus aureus PEN, FOX-S R, S betalactams_with_inhibitor, isoxazolylpenicillins, NAF S Staphylococcus Breakpoints 12
|
||||
genus is Staphylococcus FOX-S R PEN, PHN, AMP, AMX, PIP, TIC R Staphylococcus Breakpoints 12
|
||||
genus_species is Staphylococcus saprophyticus AMP S AMP, SAM, AMX, AMC, PIP, TZP S Staphylococcus Breakpoints 12
|
||||
genus is Staphylococcus FOX-S S BPR, CAC, CAT, CCL, CCP, CCV, CCX, CDC, CDR, CEB, CEC, CED, CEM, CEP, CEQ, CFA, CFM, CFM1, CFP, CFR, CFS, CFZ, CHE, CID, CMX, CMZ, CND, CPA, CPC, CPD, CPI, CPL, CPM, CPO, CPR, CPT, CPX, CRD, CRO, CSE, CSL, CSU, CTC, CTF, CTL, CTS, CTT, CTX, CTZ, CXA, CXM, CZD, CZL, CZO, CZP, CZX, DIT, DIX, DIZ, FDC, FEP, FNC, FOV, FOX, FOX-S, FPT, FPZ, HAP, LOR, LTM, MAN, RID, TIO, ZOP S Staphylococcus Breakpoints 12 sort(c(cephalosporins()[!cephalosporins() %in% as.ab(c("cefalexin", "ceftazidim", "ceftazidim/avibactam", "ceftibuten", "ceftolozan/tazobactam"))]))
|
||||
genus is Staphylococcus FOX-S I BPR, CAC, CAT, CCL, CCP, CCV, CCX, CDC, CDR, CEB, CEC, CED, CEM, CEP, CEQ, CFA, CFM, CFM1, CFP, CFR, CFS, CFZ, CHE, CID, CMX, CMZ, CND, CPA, CPC, CPD, CPI, CPL, CPM, CPO, CPR, CPT, CPX, CRD, CRO, CSE, CSL, CSU, CTC, CTF, CTL, CTS, CTT, CTX, CTZ, CXA, CXM, CZD, CZL, CZO, CZP, CZX, DIT, DIX, DIZ, FDC, FEP, FNC, FOV, FOX, FOX-S, FPT, FPZ, HAP, LOR, LTM, MAN, RID, TIO, ZOP I Staphylococcus Breakpoints 12 sort(c(cephalosporins()[!cephalosporins() %in% as.ab(c("cefalexin", "ceftazidim", "ceftazidim/avibactam", "ceftibuten", "ceftolozan/tazobactam"))]))
|
||||
genus is Staphylococcus FOX-S R BPR, CAC, CAT, CCL, CCP, CCV, CCX, CDC, CDR, CEB, CEC, CED, CEM, CEP, CEQ, CFA, CFM, CFM1, CFP, CFR, CFS, CFZ, CHE, CID, CMX, CMZ, CND, CPA, CPC, CPD, CPI, CPL, CPM, CPO, CPR, CPT, CPX, CRD, CRO, CSE, CSL, CSU, CTC, CTF, CTL, CTS, CTT, CTX, CTZ, CXA, CXM, CZD, CZL, CZO, CZP, CZX, DIT, DIX, DIZ, FDC, FEP, FNC, FOV, FOX, FOX-S, FPT, FPZ, HAP, LOR, LTM, MAN, RID, TIO, ZOP R Staphylococcus Breakpoints 12 sort(c(cephalosporins()[!cephalosporins() %in% as.ab(c("cefalexin", "ceftazidim", "ceftazidim/avibactam", "ceftibuten", "ceftolozan/tazobactam"))]))
|
||||
genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S R PEN, PHN, AMP, AMX, PIP, TIC R Staphylococcus Breakpoints 12
|
||||
genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S S BPR, CAC, CAT, CCL, CCP, CCV, CCX, CDC, CDR, CEB, CEC, CED, CEM, CEP, CEQ, CFA, CFM, CFM1, CFP, CFR, CFS, CFZ, CHE, CID, CMX, CMZ, CND, CPA, CPC, CPD, CPI, CPL, CPM, CPO, CPR, CPT, CPX, CRD, CRO, CSE, CSL, CSU, CTC, CTF, CTL, CTS, CTT, CTX, CTZ, CXA, CXM, CZD, CZL, CZO, CZP, CZX, DIT, DIX, DIZ, FDC, FEP, FNC, FOV, FOX, FOX-S, FPT, FPZ, HAP, LOR, LTM, MAN, RID, TIO, ZOP S Staphylococcus Breakpoints 12 sort(c(cephalosporins()[!cephalosporins() %in% as.ab(c("cefalexin", "ceftazidim", "ceftazidim/avibactam", "ceftibuten", "ceftolozan/tazobactam"))]))
|
||||
genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S I BPR, CAC, CAT, CCL, CCP, CCV, CCX, CDC, CDR, CEB, CEC, CED, CEM, CEP, CEQ, CFA, CFM, CFM1, CFP, CFR, CFS, CFZ, CHE, CID, CMX, CMZ, CND, CPA, CPC, CPD, CPI, CPL, CPM, CPO, CPR, CPT, CPX, CRD, CRO, CSE, CSL, CSU, CTC, CTF, CTL, CTS, CTT, CTX, CTZ, CXA, CXM, CZD, CZL, CZO, CZP, CZX, DIT, DIX, DIZ, FDC, FEP, FNC, FOV, FOX, FOX-S, FPT, FPZ, HAP, LOR, LTM, MAN, RID, TIO, ZOP I Staphylococcus Breakpoints 12 sort(c(cephalosporins()[!cephalosporins() %in% as.ab(c("cefalexin", "ceftazidim", "ceftazidim/avibactam", "ceftibuten", "ceftolozan/tazobactam"))]))
|
||||
genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S R BPR, CAC, CAT, CCL, CCP, CCV, CCX, CDC, CDR, CEB, CEC, CED, CEM, CEP, CEQ, CFA, CFM, CFM1, CFP, CFR, CFS, CFZ, CHE, CID, CMX, CMZ, CND, CPA, CPC, CPD, CPI, CPL, CPM, CPO, CPR, CPT, CPX, CRD, CRO, CSE, CSL, CSU, CTC, CTF, CTL, CTS, CTT, CTX, CTZ, CXA, CXM, CZD, CZL, CZO, CZP, CZX, DIT, DIX, DIZ, FDC, FEP, FNC, FOV, FOX, FOX-S, FPT, FPZ, HAP, LOR, LTM, MAN, RID, TIO, ZOP R Staphylococcus Breakpoints 12 sort(c(cephalosporins()[!cephalosporins() %in% as.ab(c("cefalexin", "ceftazidim", "ceftazidim/avibactam", "ceftibuten", "ceftolozan/tazobactam"))]))
|
||||
genus_species is Staphylococcus aureus FOX-S S CPT S Staphylococcus Breakpoints 12
|
||||
genus_species is Staphylococcus aureus FOX-S S BPR S Staphylococcus Breakpoints 12
|
||||
genus is Staphylococcus FOX-S S carbapenems S Staphylococcus Breakpoints 12
|
||||
genus is Staphylococcus FOX-S I carbapenems I Staphylococcus Breakpoints 12
|
||||
genus is Staphylococcus FOX-S R carbapenems R Staphylococcus Breakpoints 12
|
||||
genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S S carbapenems S Staphylococcus Breakpoints 12 Not explicitly mentioned in guidelines in this section, but previous section about these 3 species do mention OXA as preferred method
|
||||
genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S I carbapenems I Staphylococcus Breakpoints 12 Not explicitly mentioned in guidelines in this section, but previous section about these 3 species do mention OXA as preferred method
|
||||
genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S R carbapenems R Staphylococcus Breakpoints 12 Not explicitly mentioned in guidelines in this section, but previous section about these 3 species do mention OXA as preferred method
|
||||
genus is Staphylococcus NOR-S S MFX S Staphylococcus Breakpoints 12
|
||||
genus is Staphylococcus NOR-S S CIP, LVX I Staphylococcus Breakpoints 12
|
||||
genus_species is Staphylococcus aureus VAN S DAL, ORI S Staphylococcus Breakpoints 12
|
||||
genus_species is Staphylococcus aureus FOX-S, VAN R, S TLV S Staphylococcus Breakpoints 12 MRSA isolates are in this file safely denoted as FOX resistant
|
||||
genus is Staphylococcus ERY S AZM, CLR, RXT S Staphylococcus Breakpoints 12
|
||||
genus is Staphylococcus ERY R AZM, CLR, RXT R Staphylococcus Breakpoints 12
|
||||
genus is Staphylococcus TCY S DOX, MNO S Staphylococcus Breakpoints 12
|
||||
genus is Staphylococcus TCY R DOX, MNO R Staphylococcus Breakpoints 12
|
||||
genus is Enterococcus AMP S AMX, AMC, PIP, TZP S Enterococcus Breakpoints 12
|
||||
genus is Enterococcus AMP I AMX, AMC, PIP, TZP I Enterococcus Breakpoints 12
|
||||
genus is Enterococcus AMP R AMX, AMC, PIP, TZP R Enterococcus Breakpoints 12
|
||||
genus is Enterococcus NOR S CIP, LVX S Enterococcus Breakpoints 12
|
||||
genus is Enterococcus NOR I CIP, LVX I Enterococcus Breakpoints 12
|
||||
genus is Enterococcus NOR R CIP, LVX R Enterococcus Breakpoints 12
|
||||
genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN S aminopenicillins, ureidopenicillins, cephalosporins_except_CAZ, carbapenems, FLC, AMC S Streptococcus groups A, B, C, G Breakpoints 12
|
||||
genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN I aminopenicillins, ureidopenicillins, cephalosporins_except_CAZ, carbapenems, FLC, AMC I Streptococcus groups A, B, C, G Breakpoints 12
|
||||
genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN R aminopenicillins, ureidopenicillins, cephalosporins_except_CAZ, carbapenems, FLC, AMC R Streptococcus groups A, B, C, G Breakpoints 12
|
||||
genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G NOR S MFX S Streptococcus groups A, B, C, G Breakpoints 12
|
||||
genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G NOR S LVX I Streptococcus groups A, B, C, G Breakpoints 12
|
||||
genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G NOR R MFX, LVX R Streptococcus groups A, B, C, G Breakpoints 12
|
||||
genus is Staphylococcus TCY-S S DOX, MNO S Staphylococcus Breakpoints 12
|
||||
genus is Enterococcus AMP S AMP, SAM, AMX, AMC, PIP, TZP S Enterococcus Breakpoints 12
|
||||
genus is Enterococcus AMP I AMP, SAM, AMX, AMC, PIP, TZP I Enterococcus Breakpoints 12
|
||||
genus is Enterococcus AMP R AMP, SAM, AMX, AMC, PIP, TZP R Enterococcus Breakpoints 12
|
||||
genus is Enterococcus NOR-S S CIP, LVX S Enterococcus Breakpoints 12
|
||||
genus is Enterococcus NOR-S I CIP, LVX I Enterococcus Breakpoints 12
|
||||
genus is Enterococcus NOR-S R CIP, LVX R Enterococcus Breakpoints 12
|
||||
genus_species one_of Streptococcus Group A, Streptococcus Group C, Streptococcus Group G PEN S penicillins S Streptococcus groups A, B, C, G Breakpoints 12
|
||||
genus_species one_of Streptococcus Group A, Streptococcus Group C, Streptococcus Group G PEN I penicillins I Streptococcus groups A, B, C, G Breakpoints 12
|
||||
genus_species one_of Streptococcus Group A, Streptococcus Group C, Streptococcus Group G PEN R penicillins R Streptococcus groups A, B, C, G Breakpoints 12
|
||||
genus_species is Streptococcus Group B PEN S AMC, AMP, AMX, APL, APX, AXS, AZD, AZL, BAM, BNB, BNP, CIC, CLM, CRB, CRN, EPC, HET, LEN, MEC, MEZ, MSU, MTM, NAF, PEN, PHE, PIP, PIS, PME, PNM, PNO, PRB, PRC, PRP, PSU, PVM, SAM, SBC, SLT6, SRX, TAL, TCC, TEM, TIC, TZP S Streptococcus groups A, B, C, G Breakpoints 12 penicillins()[!penicillins() %in% c("PHN", isoxazolylpenicillins())]
|
||||
genus_species is Streptococcus Group B PEN I AMC, AMP, AMX, APL, APX, AXS, AZD, AZL, BAM, BNB, BNP, CIC, CLM, CRB, CRN, EPC, HET, LEN, MEC, MEZ, MSU, MTM, NAF, PEN, PHE, PIP, PIS, PME, PNM, PNO, PRB, PRC, PRP, PSU, PVM, SAM, SBC, SLT6, SRX, TAL, TCC, TEM, TIC, TZP I Streptococcus groups A, B, C, G Breakpoints 12 penicillins()[!penicillins() %in% c("PHN", isoxazolylpenicillins())]
|
||||
genus_species is Streptococcus Group B PEN R AMC, AMP, AMX, APL, APX, AXS, AZD, AZL, BAM, BNB, BNP, CIC, CLM, CRB, CRN, EPC, HET, LEN, MEC, MEZ, MSU, MTM, NAF, PEN, PHE, PIP, PIS, PME, PNM, PNO, PRB, PRC, PRP, PSU, PVM, SAM, SBC, SLT6, SRX, TAL, TCC, TEM, TIC, TZP R Streptococcus groups A, B, C, G Breakpoints 12 penicillins()[!penicillins() %in% c("PHN", isoxazolylpenicillins())]
|
||||
genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN S cephalosporins S Streptococcus groups A, B, C, G Breakpoints 12
|
||||
genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN I cephalosporins I Streptococcus groups A, B, C, G Breakpoints 12
|
||||
genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN R cephalosporins R Streptococcus groups A, B, C, G Breakpoints 12
|
||||
genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN S carbapenems S Streptococcus groups A, B, C, G Breakpoints 12
|
||||
genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN I carbapenems I Streptococcus groups A, B, C, G Breakpoints 12
|
||||
genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN R carbapenems R Streptococcus groups A, B, C, G Breakpoints 12
|
||||
genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G NOR-S S MFX S Streptococcus groups A, B, C, G Breakpoints 12 does not explicitly state that it is for other fluoroquinolones
|
||||
genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G NOR-S S LVX I Streptococcus groups A, B, C, G Breakpoints 12 does not explicitly state that it is for other fluoroquinolones
|
||||
genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G NOR-S R MFX, LVX R Streptococcus groups A, B, C, G Breakpoints 12 does not explicitly state that it is for other fluoroquinolones
|
||||
genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G VAN S DAL, ORI S Streptococcus groups A, B, C, G Breakpoints 12
|
||||
genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G ERY S AZM, CLR, RXT S Streptococcus groups A, B, C, G Breakpoints 12
|
||||
genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G ERY I AZM, CLR, RXT I Streptococcus groups A, B, C, G Breakpoints 12
|
||||
genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G ERY R AZM, CLR, RXT R Streptococcus groups A, B, C, G Breakpoints 12
|
||||
genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G TCY S DOX, MNO S Streptococcus groups A, B, C, G Breakpoints 12
|
||||
genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G TCY R DOX, MNO R Streptococcus groups A, B, C, G Breakpoints 12
|
||||
genus_species is Streptococcus pneumoniae PEN S AMP, AMX, AMC, PIP, TZP S Streptococcus pneumoniae Breakpoints 12
|
||||
genus_species is Streptococcus pneumoniae AMP S AMX, AMC, PIP, TZP S Streptococcus pneumoniae Breakpoints 12
|
||||
genus_species is Streptococcus pneumoniae AMP I AMX, AMC, PIP, TZP I Streptococcus pneumoniae Breakpoints 12
|
||||
genus_species is Streptococcus pneumoniae AMP R AMX, AMC, PIP, TZP R Streptococcus pneumoniae Breakpoints 12
|
||||
genus_species is Streptococcus pneumoniae NOR S MFX S Streptococcus pneumoniae Breakpoints 12
|
||||
genus_species is Streptococcus pneumoniae NOR S LVX I Streptococcus pneumoniae Breakpoints 12
|
||||
genus_species is Streptococcus pneumoniae NOR R MFX, LVX R Streptococcus pneumoniae Breakpoints 12
|
||||
genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G TCY-S S DOX, MNO S Streptococcus groups A, B, C, G Breakpoints 12
|
||||
genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G TCY-S R DOX, MNO R Streptococcus groups A, B, C, G Breakpoints 12
|
||||
genus_species is Streptococcus pneumoniae OXA-S S AMC, AMP, AMX, CPD, CPT, CRO, CTX, CXM, DOR, ETP, FEP, IMR, IPM, MEM, MEV, OXA, PEN, PHN, PIP, SAM, TZP S Streptococcus pneumoniae Breakpoints 12 x <- unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2022" & clinical_breakpoints$mo == as.mo("S. pneumoniae") & clinical_breakpoints$ab != as.ab("cefaclor"))]); sort(c(x[x %in% betalactams()], "SAM", "PIP", "TZP", "PHN", "IMR", "MEV"))
|
||||
genus_species is Streptococcus pneumoniae PEN S AMC, AMP, AMX, CPD, CPT, CRO, CTX, CXM, DOR, ETP, FEP, IMR, IPM, MEM, MEV, OXA, PEN, PHN, PIP, SAM, TZP S Streptococcus pneumoniae Breakpoints 12 x <- unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2022" & clinical_breakpoints$mo == as.mo("S. pneumoniae") & clinical_breakpoints$ab != as.ab("cefaclor"))]); sort(c(x[x %in% betalactams()], "SAM", "PIP", "TZP", "PHN", "IMR", "MEV"))
|
||||
genus_species is Streptococcus pneumoniae OXA-S S CEC I Streptococcus pneumoniae Breakpoints 12
|
||||
genus_species is Streptococcus pneumoniae PEN S CEC I Streptococcus pneumoniae Breakpoints 12
|
||||
genus_species is Streptococcus pneumoniae OXA-S R PEN, PHN R Streptococcus pneumoniae Breakpoints 12 from flowchart: when OXA < 20 or PEN > 0.06
|
||||
genus_species is Streptococcus pneumoniae PEN R PHN R Streptococcus pneumoniae Breakpoints 12 from flowchart: when OXA < 20 or PEN > 0.06
|
||||
genus_species is Streptococcus pneumoniae AMP S AMX, AMC, SAM, PIP, TZP S Streptococcus pneumoniae Breakpoints 12
|
||||
genus_species is Streptococcus pneumoniae AMP I AMX, AMC, SAM, PIP, TZP I Streptococcus pneumoniae Breakpoints 12
|
||||
genus_species is Streptococcus pneumoniae AMP R AMX, AMC, SAM, PIP, TZP R Streptococcus pneumoniae Breakpoints 12
|
||||
genus_species is Streptococcus pneumoniae NOR-S S MFX S Streptococcus pneumoniae Breakpoints 12 does not explicitly state that it is for other fluoroquinolones
|
||||
genus_species is Streptococcus pneumoniae NOR-S S LVX I Streptococcus pneumoniae Breakpoints 12 does not explicitly state that it is for other fluoroquinolones
|
||||
genus_species is Streptococcus pneumoniae NOR-S R MFX, LVX R Streptococcus pneumoniae Breakpoints 12 does not explicitly state that it is for other fluoroquinolones
|
||||
genus_species is Streptococcus pneumoniae ERY S AZM, CLR, RXT S Streptococcus pneumoniae Breakpoints 12
|
||||
genus_species is Streptococcus pneumoniae ERY I AZM, CLR, RXT I Streptococcus pneumoniae Breakpoints 12
|
||||
genus_species is Streptococcus pneumoniae ERY R AZM, CLR, RXT R Streptococcus pneumoniae Breakpoints 12
|
||||
genus_species is Streptococcus pneumoniae TCY S DOX, MNO S Streptococcus pneumoniae Breakpoints 12
|
||||
genus_species is Streptococcus pneumoniae TCY R DOX, MNO R Streptococcus pneumoniae Breakpoints 12
|
||||
genus_species like ^Streptococcus (anginosus|australis|bovis|constellatus|cristatus|equinus|gallolyticus|gordonii|infantarius|infantis|intermedius|mitis|mutans|oligofermentans|oralis|parasanguinis|peroris|pseudopneumoniae|salivarius|sanguinis|sinensis|sobrinus|thermophilus|vestibularis|viridans)$ PEN S AMP, AMX, AMC, PIP, TZP S Viridans group streptococci Breakpoints 12
|
||||
genus_species like ^Streptococcus (anginosus|australis|bovis|constellatus|cristatus|equinus|gallolyticus|gordonii|infantarius|infantis|intermedius|mitis|mutans|oligofermentans|oralis|parasanguinis|peroris|pseudopneumoniae|salivarius|sanguinis|sinensis|sobrinus|thermophilus|vestibularis|viridans)$ AMP S AMX, AMC, PIP, TZP S Viridans group streptococci Breakpoints 12
|
||||
genus_species like ^Streptococcus (anginosus|australis|bovis|constellatus|cristatus|equinus|gallolyticus|gordonii|infantarius|infantis|intermedius|mitis|mutans|oligofermentans|oralis|parasanguinis|peroris|pseudopneumoniae|salivarius|sanguinis|sinensis|sobrinus|thermophilus|vestibularis|viridans)$ AMP I AMX, AMC, PIP, TZP I Viridans group streptococci Breakpoints 12
|
||||
genus_species like ^Streptococcus (anginosus|australis|bovis|constellatus|cristatus|equinus|gallolyticus|gordonii|infantarius|infantis|intermedius|mitis|mutans|oligofermentans|oralis|parasanguinis|peroris|pseudopneumoniae|salivarius|sanguinis|sinensis|sobrinus|thermophilus|vestibularis|viridans)$ AMP R AMX, AMC, PIP, TZP R Viridans group streptococci Breakpoints 12
|
||||
genus_species is Haemophilus influenzae AMP S AMX, PIP S Haemophilus influenzae Breakpoints 12
|
||||
genus_species is Haemophilus influenzae AMP I AMX, PIP I Haemophilus influenzae Breakpoints 12
|
||||
genus_species is Haemophilus influenzae AMP R AMX, PIP R Haemophilus influenzae Breakpoints 12
|
||||
genus_species is Haemophilus influenzae PEN S AMP, AMX, AMC, PIP, TZP S Haemophilus influenzae Breakpoints 12
|
||||
genus_species is Haemophilus influenzae AMC S TZP S Haemophilus influenzae Breakpoints 12
|
||||
genus_species is Haemophilus influenzae AMC I TZP I Haemophilus influenzae Breakpoints 12
|
||||
genus_species is Haemophilus influenzae AMC R TZP R Haemophilus influenzae Breakpoints 12
|
||||
genus_species is Haemophilus influenzae NAL S CIP, LVX, MFX, OFX S Haemophilus influenzae Breakpoints 12
|
||||
genus_species is Streptococcus pneumoniae TCY-S S DOX, MNO S Streptococcus pneumoniae Breakpoints 12
|
||||
genus_species is Streptococcus pneumoniae TCY-S R DOX, MNO R Streptococcus pneumoniae Breakpoints 12
|
||||
genus_species one_of Streptococcus milleri, Streptococcus acidominimus, Streptococcus anginosus, Streptococcus anginosus, Streptococcus anginosus, Streptococcus constellatus, Streptococcus constellatus, Streptococcus constellatus, Streptococcus constellatus, Streptococcus criceti, Streptococcus cristatus, Streptococcus downei, Streptococcus equinus, Streptococcus ferus, Streptococcus gordonii, Streptococcus intermedius, Streptococcus macacae, Streptococcus mitis, Streptococcus mutans, Streptococcus oralis, Streptococcus oralis, Streptococcus oralis, Streptococcus oralis, Streptococcus parasanguinis, Streptococcus ratti, Streptococcus salivarius, Streptococcus salivarius, Streptococcus thermophilus, Streptococcus sanguinis, Streptococcus sobrinus, Streptococcus suis, Streptococcus uberis, Streptococcus vestibularis PEN-S S AMC, AMP, AMX, CPD, CPT, CRO, CTX, CXM, DOR, ETP, FEP, IMR, IPM, MEM, MEV, OXA, PEN, PIP, SAM, TZP S Viridans group streptococci Breakpoints 12 paste("Streptococcus", mo_species(microorganisms.groups$mo[which(microorganisms.groups$mo_group == "B_STRPT_VIRI")]), collapse = ", ")
|
||||
genus_species one_of Streptococcus milleri, Streptococcus acidominimus, Streptococcus anginosus, Streptococcus anginosus, Streptococcus anginosus, Streptococcus constellatus, Streptococcus constellatus, Streptococcus constellatus, Streptococcus constellatus, Streptococcus criceti, Streptococcus cristatus, Streptococcus downei, Streptococcus equinus, Streptococcus ferus, Streptococcus gordonii, Streptococcus intermedius, Streptococcus macacae, Streptococcus mitis, Streptococcus mutans, Streptococcus oralis, Streptococcus oralis, Streptococcus oralis, Streptococcus oralis, Streptococcus parasanguinis, Streptococcus ratti, Streptococcus salivarius, Streptococcus salivarius, Streptococcus thermophilus, Streptococcus sanguinis, Streptococcus sobrinus, Streptococcus suis, Streptococcus uberis, Streptococcus vestibularis PEN-S R AMC, AMP, AMX, CPD, CPT, CRO, CTX, CXM, DOR, ETP, FEP, IMR, IPM, MEM, MEV, OXA, PEN, PIP, SAM, TZP R Viridans group streptococci Breakpoints 12 paste("Streptococcus", mo_species(microorganisms.groups$mo[which(microorganisms.groups$mo_group == "B_STRPT_VIRI")]), collapse = ", ")
|
||||
genus_species one_of Streptococcus milleri, Streptococcus acidominimus, Streptococcus anginosus, Streptococcus anginosus, Streptococcus anginosus, Streptococcus constellatus, Streptococcus constellatus, Streptococcus constellatus, Streptococcus constellatus, Streptococcus criceti, Streptococcus cristatus, Streptococcus downei, Streptococcus equinus, Streptococcus ferus, Streptococcus gordonii, Streptococcus intermedius, Streptococcus macacae, Streptococcus mitis, Streptococcus mutans, Streptococcus oralis, Streptococcus oralis, Streptococcus oralis, Streptococcus oralis, Streptococcus parasanguinis, Streptococcus ratti, Streptococcus salivarius, Streptococcus salivarius, Streptococcus thermophilus, Streptococcus sanguinis, Streptococcus sobrinus, Streptococcus suis, Streptococcus uberis, Streptococcus vestibularis AMP S AMX, AMC, SAM, PIP, TZP S Viridans group streptococci Breakpoints 12 paste("Streptococcus", mo_species(microorganisms.groups$mo[which(microorganisms.groups$mo_group == "B_STRPT_VIRI")]), collapse = ", ")
|
||||
genus_species one_of Streptococcus milleri, Streptococcus acidominimus, Streptococcus anginosus, Streptococcus anginosus, Streptococcus anginosus, Streptococcus constellatus, Streptococcus constellatus, Streptococcus constellatus, Streptococcus constellatus, Streptococcus criceti, Streptococcus cristatus, Streptococcus downei, Streptococcus equinus, Streptococcus ferus, Streptococcus gordonii, Streptococcus intermedius, Streptococcus macacae, Streptococcus mitis, Streptococcus mutans, Streptococcus oralis, Streptococcus oralis, Streptococcus oralis, Streptococcus oralis, Streptococcus parasanguinis, Streptococcus ratti, Streptococcus salivarius, Streptococcus salivarius, Streptococcus thermophilus, Streptococcus sanguinis, Streptococcus sobrinus, Streptococcus suis, Streptococcus uberis, Streptococcus vestibularis AMP I AMX, AMC, SAM, PIP, TZP I Viridans group streptococci Breakpoints 12 paste("Streptococcus", mo_species(microorganisms.groups$mo[which(microorganisms.groups$mo_group == "B_STRPT_VIRI")]), collapse = ", ")
|
||||
genus_species one_of Streptococcus milleri, Streptococcus acidominimus, Streptococcus anginosus, Streptococcus anginosus, Streptococcus anginosus, Streptococcus constellatus, Streptococcus constellatus, Streptococcus constellatus, Streptococcus constellatus, Streptococcus criceti, Streptococcus cristatus, Streptococcus downei, Streptococcus equinus, Streptococcus ferus, Streptococcus gordonii, Streptococcus intermedius, Streptococcus macacae, Streptococcus mitis, Streptococcus mutans, Streptococcus oralis, Streptococcus oralis, Streptococcus oralis, Streptococcus oralis, Streptococcus parasanguinis, Streptococcus ratti, Streptococcus salivarius, Streptococcus salivarius, Streptococcus thermophilus, Streptococcus sanguinis, Streptococcus sobrinus, Streptococcus suis, Streptococcus uberis, Streptococcus vestibularis AMP R AMX, AMC, SAM, PIP, TZP R Viridans group streptococci Breakpoints 12 paste("Streptococcus", mo_species(microorganisms.groups$mo[which(microorganisms.groups$mo_group == "B_STRPT_VIRI")]), collapse = ", ")
|
||||
genus_species is Haemophilus influenzae PEN-S S AMC, AMP, AMX, CFM, CPD, CPT, CRO, CTB, CTX, CXM, CZT, DOR, ETP, FEP, IMR, IPM, MEM, MEV, PEN, SAM, TZP S Haemophilus influenzae Breakpoints 12 x <- c(unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2022" & clinical_breakpoints$mo == as.mo("H. influenzae"))]), "IMR", "MEV"); sort(x[x %in% betalactams()])
|
||||
genus_species is Haemophilus influenzae PEN-S, BTL-S R, R AMP, AMX, PIP R Haemophilus influenzae Breakpoints 12
|
||||
genus_species is Haemophilus influenzae AMC S SAM S Haemophilus influenzae Breakpoints 12
|
||||
genus_species is Haemophilus influenzae AMC I SAM I Haemophilus influenzae Breakpoints 12
|
||||
genus_species is Haemophilus influenzae AMC R SAM R Haemophilus influenzae Breakpoints 12
|
||||
genus_species is Haemophilus influenzae NAL-S S CIP, LVX, MFX, OFX S Haemophilus influenzae Breakpoints 12
|
||||
genus_species is Haemophilus influenzae NAL-S R CIP, LVX, MFX, OFX R Haemophilus influenzae Breakpoints 12
|
||||
genus_species is Haemophilus influenzae TCY S DOX, MNO S Haemophilus influenzae Breakpoints 12
|
||||
genus_species is Haemophilus influenzae TCY R DOX, MNO R Haemophilus influenzae Breakpoints 12
|
||||
genus_species is Moraxella catarrhalis NOR S CIP, LVX, MFX, OFX S Streptococcus pneumoniae Breakpoints 12
|
||||
genus_species is Moraxella catarrhalis NOR R CIP, LVX, MFX, OFX R Streptococcus pneumoniae Breakpoints 12
|
||||
genus_species is Moraxella catarrhalis BTL-S R AMP, AMX, APL, APX, AZD, AZL, BAM, BNB, BNP, CIC, CLM, CLO, CRB, CRN, DIC, EPC, FLC, HET, LEN, MEC, MET, MEZ, MTM, NAF, OXA, PEN, PHE, PHN, PIP, PME, PNM, PRB, PRC, PRP, PVM, SBC, SLT6, SRX, TAL, TEM, TIC R Moraxella catarrhalis Breakpoints 12 penicillins()[!penicillins() %in% betalactams_with_inhibitor()]
|
||||
genus_species is Moraxella catarrhalis AMC S TZP S Moraxella catarrhalis Breakpoints 12
|
||||
genus_species is Moraxella catarrhalis AMC I TZP I Moraxella catarrhalis Breakpoints 12
|
||||
genus_species is Moraxella catarrhalis AMC R TZP R Moraxella catarrhalis Breakpoints 12
|
||||
genus_species is Moraxella catarrhalis NAL S CIP, LVX, MFX, OFX S Moraxella catarrhalis Breakpoints 12
|
||||
genus_species is Moraxella catarrhalis NAL-S S CIP, LVX, MFX, OFX S Moraxella catarrhalis Breakpoints 12
|
||||
genus_species is Moraxella catarrhalis NAL-S R CIP, LVX, MFX, OFX R Moraxella catarrhalis Breakpoints 12
|
||||
genus_species is Moraxella catarrhalis ERY S AZM, CLR, RXT S Moraxella catarrhalis Breakpoints 12
|
||||
genus_species is Moraxella catarrhalis ERY I AZM, CLR, RXT I Moraxella catarrhalis Breakpoints 12
|
||||
genus_species is Moraxella catarrhalis ERY R AZM, CLR, RXT R Moraxella catarrhalis Breakpoints 12
|
||||
genus_species is Moraxella catarrhalis TCY S DOX, MNO S Moraxella catarrhalis Breakpoints 12
|
||||
genus_species is Moraxella catarrhalis TCY R DOX, MNO R Moraxella catarrhalis Breakpoints 12
|
||||
genus_species is Neisseria gonorrhoeae BTL-S R AMP, AMX R Neisseria gonorrhoeae Breakpoints 12
|
||||
genus_species is Neisseria gonorrhoeae BTL-S, PEN S, S AMP, AMX S Neisseria gonorrhoeae Breakpoints 12
|
||||
genus_species is Neisseria gonorrhoeae BTL-S, PEN S, I AMP, AMX I Neisseria gonorrhoeae Breakpoints 12
|
||||
genus_species is Neisseria gonorrhoeae BTL-S, PEN S, R AMP, AMX R Neisseria gonorrhoeae Breakpoints 12
|
||||
genus_species is Neisseria meningitidis TCY-S S MNO S Neisseria meningitidis Breakpoints 12
|
||||
genus_species is Neisseria meningitidis TCY-S I MNO I Neisseria meningitidis Breakpoints 12
|
||||
genus_species is Neisseria meningitidis TCY-S R MNO R Neisseria meningitidis Breakpoints 12
|
||||
genus_species is Pasteurella multocida PEN S AMP, AMX S Pasteurella multocida Breakpoints 12
|
||||
genus_species is Pasteurella multocida PEN I AMP, AMX I Pasteurella multocida Breakpoints 12
|
||||
genus_species is Pasteurella multocida PEN R AMP, AMX R Pasteurella multocida Breakpoints 12
|
||||
genus_species is Pasteurella multocida NOR S CIP, LVX S Streptococcus pneumoniae Breakpoints 12
|
||||
genus_species is Pasteurella multocida NOR R CIP, LVX R Streptococcus pneumoniae Breakpoints 12
|
||||
genus_species is Campylobacter coli ERY S AZM, CLR S Campylobacter coli Breakpoints 12
|
||||
genus_species is Campylobacter coli ERY I AZM, CLR I Campylobacter coli Breakpoints 12
|
||||
genus_species is Campylobacter coli ERY R AZM, CLR R Campylobacter coli Breakpoints 12
|
||||
genus_species is Campylobacter coli TCY S DOX S Campylobacter coli Breakpoints 12
|
||||
genus_species is Campylobacter coli TCY I DOX I Campylobacter coli Breakpoints 12
|
||||
genus_species is Campylobacter coli TCY R DOX R Campylobacter coli Breakpoints 12
|
||||
genus_species is Campylobacter jejuni ERY S AZM, CLR S Campylobacter jejuni Breakpoints 12
|
||||
genus_species is Campylobacter jejuni ERY I AZM, CLR I Campylobacter jejuni Breakpoints 12
|
||||
genus_species is Campylobacter jejuni ERY R AZM, CLR R Campylobacter jejuni Breakpoints 12
|
||||
genus_species is Campylobacter jejuni TCY S DOX S Campylobacter jejuni Breakpoints 12
|
||||
genus_species is Campylobacter jejuni TCY I DOX I Campylobacter jejuni Breakpoints 12
|
||||
genus_species is Campylobacter jejuni TCY R DOX R Campylobacter jejuni Breakpoints 12
|
||||
genus_species is Aerococcus sanguinicola AMP S AMX S Aerococcus sanguinicola Breakpoints 12
|
||||
genus_species is Aerococcus sanguinicola AMP I AMX I Aerococcus sanguinicola Breakpoints 12
|
||||
genus_species is Aerococcus sanguinicola AMP R AMX R Aerococcus sanguinicola Breakpoints 12
|
||||
genus_species is Aerococcus sanguinicola NOR S fluoroquinolones S Aerococcus sanguinicola Breakpoints 12
|
||||
genus_species is Aerococcus sanguinicola NOR I fluoroquinolones I Aerococcus sanguinicola Breakpoints 12
|
||||
genus_species is Aerococcus sanguinicola NOR R fluoroquinolones R Aerococcus sanguinicola Breakpoints 12
|
||||
genus_species is Aerococcus sanguinicola CIP S LVX S Aerococcus sanguinicola Breakpoints 12
|
||||
genus_species is Aerococcus sanguinicola CIP I LVX I Aerococcus sanguinicola Breakpoints 12
|
||||
genus_species is Aerococcus sanguinicola CIP R LVX R Aerococcus urinae Breakpoints 12
|
||||
genus_species is Aerococcus urinae AMP S AMX S Aerococcus sanguinicola Breakpoints 12
|
||||
genus_species is Aerococcus urinae AMP I AMX I Aerococcus sanguinicola Breakpoints 12
|
||||
genus_species is Aerococcus urinae AMP R AMX R Aerococcus sanguinicola Breakpoints 12
|
||||
genus_species is Aerococcus urinae NOR S fluoroquinolones S Aerococcus urinae Breakpoints 12
|
||||
genus_species is Aerococcus urinae NOR I fluoroquinolones I Aerococcus urinae Breakpoints 12
|
||||
genus_species is Aerococcus urinae NOR R fluoroquinolones R Aerococcus urinae Breakpoints 12
|
||||
genus_species is Aerococcus urinae CIP S LVX S Aerococcus urinae Breakpoints 12
|
||||
genus_species is Aerococcus urinae CIP I LVX I Aerococcus urinae Breakpoints 12
|
||||
genus_species is Aerococcus urinae CIP R LVX R Aerococcus urinae Breakpoints 12
|
||||
genus_species is Pasteurella multocida NAL-S S CIP, LVX S Pasteurella multocida Breakpoints 12
|
||||
genus_species is Pasteurella multocida NAL-S R CIP, LVX R Pasteurella multocida Breakpoints 12
|
||||
genus_species is Pasteurella multocida TCY-S S DOX S Neisseria meningitidis Breakpoints 12
|
||||
genus_species is Pasteurella multocida TCY-S I DOX I Neisseria meningitidis Breakpoints 12
|
||||
genus_species is Pasteurella multocida TCY-S R DOX R Neisseria meningitidis Breakpoints 12
|
||||
genus_species one_of Campylobacter coli, Campylobacter jejuni ERY S AZM, CLR S Campylobacter coli/jejuni Breakpoints 12
|
||||
genus_species one_of Campylobacter coli, Campylobacter jejuni ERY I AZM, CLR I Campylobacter coli/jejuni Breakpoints 12
|
||||
genus_species one_of Campylobacter coli, Campylobacter jejuni ERY R AZM, CLR R Campylobacter coli/jejuni Breakpoints 12
|
||||
genus_species one_of Campylobacter coli, Campylobacter jejuni TCY S DOX S Campylobacter coli/jejuni Breakpoints 12
|
||||
genus_species one_of Campylobacter coli, Campylobacter jejuni TCY I DOX I Campylobacter coli/jejuni Breakpoints 12
|
||||
genus_species one_of Campylobacter coli, Campylobacter jejuni TCY R DOX R Campylobacter coli/jejuni Breakpoints 12
|
||||
genus_species is Aerococcus sanguinicola, Aerococcus urinae AMP S AMX S Aerococcus sanguinicola/urinae Breakpoints 12
|
||||
genus_species is Aerococcus sanguinicola, Aerococcus urinae AMP I AMX I Aerococcus sanguinicola/urinae Breakpoints 12
|
||||
genus_species is Aerococcus sanguinicola, Aerococcus urinae AMP R AMX R Aerococcus sanguinicola/urinae Breakpoints 12
|
||||
genus_species is Aerococcus sanguinicola, Aerococcus urinae CIP S LVX S Aerococcus sanguinicola/urinae Breakpoints 12
|
||||
genus_species is Aerococcus sanguinicola, Aerococcus urinae CIP I LVX I Aerococcus sanguinicola/urinae Breakpoints 12
|
||||
genus_species is Aerococcus sanguinicola, Aerococcus urinae CIP R LVX R Aerococcus sanguinicola/urinae Breakpoints 12
|
||||
genus_species is Aerococcus sanguinicola, Aerococcus urinae NOR-S S fluoroquinolones S Aerococcus sanguinicola/urinae Breakpoints 12
|
||||
genus_species is Aerococcus sanguinicola, Aerococcus urinae NOR-S I fluoroquinolones I Aerococcus sanguinicola/urinae Breakpoints 12
|
||||
genus_species is Aerococcus sanguinicola, Aerococcus urinae NOR-S R fluoroquinolones R Aerococcus sanguinicola/urinae Breakpoints 12
|
||||
genus_species is Kingella kingae BTL-S R PEN, AMP, AMX R Kingella kingae Breakpoints 12
|
||||
genus_species is Kingella kingae PEN S AMP, AMX S Kingella kingae Breakpoints 12
|
||||
genus_species is Kingella kingae PEN I AMP, AMX I Kingella kingae Breakpoints 12
|
||||
genus_species is Kingella kingae PEN R AMP, AMX R Kingella kingae Breakpoints 12
|
||||
@ -337,19 +368,19 @@ genus_species is Kingella kingae ERY I AZM, CLR I Kingella kingae Breakpoints 12
|
||||
genus_species is Kingella kingae ERY R AZM, CLR R Kingella kingae Breakpoints 12
|
||||
genus_species is Kingella kingae TCY S DOX S Kingella kingae Breakpoints 12
|
||||
genus_species is Kingella kingae TCY R DOX R Kingella kingae Breakpoints 12
|
||||
genus is Vibrio PEF S CIP, LVX S Vibrio spp. Breakpoints 12
|
||||
genus is Vibrio PEF I CIP, LVX I Vibrio spp. Breakpoints 12
|
||||
genus is Vibrio PEF R CIP, LVX R Vibrio spp. Breakpoints 12
|
||||
genus is Vibrio PEF-S S CIP, LVX S Vibrio spp. Breakpoints 12
|
||||
genus is Vibrio PEF-S I CIP, LVX I Vibrio spp. Breakpoints 12
|
||||
genus is Vibrio PEF-S R CIP, LVX R Vibrio spp. Breakpoints 12
|
||||
genus is Vibrio ERY S AZM S Vibrio spp. Breakpoints 12
|
||||
genus is Vibrio ERY I AZM I Vibrio spp. Breakpoints 12
|
||||
genus is Vibrio ERY R AZM R Vibrio spp. Breakpoints 12
|
||||
genus is Vibrio TCY S DOX S Vibrio spp. Breakpoints 12
|
||||
genus is Vibrio TCY I DOX I Vibrio spp. Breakpoints 12
|
||||
genus is Vibrio TCY R DOX R Vibrio spp. Breakpoints 12
|
||||
genus is Bacillus NOR S CIP, LVX S Bacillus Breakpoints 12
|
||||
genus is Bacillus NOR R CIP, LVX R Bacillus Breakpoints 12
|
||||
genus_species is Burkholderia pseudomallei TCY S DOX I Burkholderia pseudomallei Breakpoints 12
|
||||
genus_species is Burkholderia pseudomallei TCY R DOX R Burkholderia pseudomallei Breakpoints 12
|
||||
genus is Vibrio TCY-S S DOX S Vibrio spp. Breakpoints 12
|
||||
genus is Vibrio TCY-S I DOX I Vibrio spp. Breakpoints 12
|
||||
genus is Vibrio TCY-S R DOX R Vibrio spp. Breakpoints 12
|
||||
genus is Bacillus NOR-S S CIP, LVX I Bacillus Breakpoints 12
|
||||
genus is Bacillus NOR-S R CIP, LVX R Bacillus Breakpoints 12
|
||||
genus_species is Burkholderia pseudomallei TCY-S S DOX I Burkholderia pseudomallei Breakpoints 12
|
||||
genus_species is Burkholderia pseudomallei TCY-S R DOX R Burkholderia pseudomallei Breakpoints 12
|
||||
order is Enterobacterales PEN, glycopeptides_except_lipo, FUS, macrolides, LIN, streptogramins, RIF, DAP, LNZ R Table 01: Intrinsic resistance in Enterobacterales (at the time: Enterobacteriaceae) Expert Rules 3.1
|
||||
fullname like ^Citrobacter (koseri|amalonaticus|sedlakii|farmeri|rodentium) aminopenicillins, TIC R Table 01: Intrinsic resistance in Enterobacterales (at the time: Enterobacteriaceae) Expert Rules 3.1
|
||||
fullname like ^Citrobacter (freundii|braakii|murliniae|werkmanii|youngae) aminopenicillins, AMC, CZO, FOX R Table 01: Intrinsic resistance in Enterobacterales (at the time: Enterobacteriaceae) Expert Rules 3.1
|
||||
@ -498,9 +529,7 @@ fullname like ^(Serratia|Providencia|Morganella morganii) TGC R Expert Rules o
|
||||
genus is Salmonella cephalosporins_2nd R Expert Rules on Salmonella Expert Rules 3.2
|
||||
genus is Salmonella aminoglycosides R Expert Rules on Salmonella Expert Rules 3.2
|
||||
genus is Salmonella PEF R CIP R Expert Rules on Salmonella Expert Rules 3.2
|
||||
genus_species is Staphylococcus aureus FOX1 R betalactams R Expert Rules on Staphylococcus Expert Rules 3.2
|
||||
genus_species is Staphylococcus aureus FOX R betalactams R Expert Rules on Staphylococcus Expert Rules 3.2
|
||||
genus_species is Staphylococcus aureus FOX1 S betalactams_with_inhibitor S Expert Rules on Staphylococcus Expert Rules 3.2
|
||||
genus_species is Staphylococcus aureus FOX S betalactams_with_inhibitor S Expert Rules on Staphylococcus Expert Rules 3.2
|
||||
genus_species one_of Staphylococcus aureus, Staphylococcus lugdunensis PEN R AMP, AMX, AZL, BAM, CRB, CRN, EPC, HET, MEC, MEZ, MTM, PIP, PME, PVM, SBC, TAL, TEM, TIC R Expert Rules on Staphylococcus Expert Rules 3.2 all penicillins without beta-lactamse inhibitor
|
||||
genus is Staphylococcus ERY, CLI S macrolides, lincosamides S Expert Rules on Staphylococcus Expert Rules 3.2
|
||||
@ -618,9 +647,7 @@ fullname like ^(Serratia|Providencia|Morganella morganii) TGC R Expert Rules o
|
||||
genus is Salmonella cephalosporins_2nd R Expert Rules on Salmonella Expert Rules 3.3
|
||||
genus is Salmonella aminoglycosides R Expert Rules on Salmonella Expert Rules 3.3
|
||||
genus is Salmonella PEF R CIP R Expert Rules on Salmonella Expert Rules 3.3
|
||||
genus_species is Staphylococcus aureus FOX1 R betalactams R Expert Rules on Staphylococcus Expert Rules 3.3
|
||||
genus_species is Staphylococcus aureus FOX R betalactams R Expert Rules on Staphylococcus Expert Rules 3.3
|
||||
genus_species is Staphylococcus aureus FOX1 S betalactams_with_inhibitor S Expert Rules on Staphylococcus Expert Rules 3.3
|
||||
genus_species is Staphylococcus aureus FOX S betalactams_with_inhibitor S Expert Rules on Staphylococcus Expert Rules 3.3
|
||||
genus_species one_of Staphylococcus aureus, Staphylococcus lugdunensis PEN R AMP, AMX, AZL, BAM, CRB, CRN, EPC, HET, MEC, MEZ, MTM, PIP, PME, PVM, SBC, TAL, TEM, TIC R Expert Rules on Staphylococcus Expert Rules 3.3 all penicillins without beta-lactamse inhibitor
|
||||
genus is Staphylococcus ERY, CLI S macrolides, lincosamides S Expert Rules on Staphylococcus Expert Rules 3.3
|
||||
|
||||
|
Can't render this file because it has a wrong number of fields in line 9.
|
File diff suppressed because one or more lines are too long
@ -777,14 +777,110 @@ antimicrobials[which(antimicrobials$ab == "EFF"), "abbreviations"][[1]] <- list(
|
||||
# add clindamycin inducible screening
|
||||
clin <- antimicrobials |>
|
||||
filter(ab == "FOX1") |>
|
||||
mutate(ab = as.character("CLI1"),
|
||||
mutate(ab = as.character("CLI-S"),
|
||||
name = "Clindamycin inducible screening",
|
||||
group = "Macrolides/lincosamides")
|
||||
antimicrobials <- antimicrobials |>
|
||||
mutate(ab = as.character(ab)) |>
|
||||
bind_rows(clin)
|
||||
class(antimicrobials$ab) <- c("ab", "character")
|
||||
antimicrobials[which(antimicrobials$ab == "CLI1"), "abbreviations"][[1]] <- list(c("clindamycin inducible", "clinda inducible", "clin inducible"))
|
||||
antimicrobials[which(antimicrobials$ab == "CLI-S"), "abbreviations"][[1]] <- list(c("clindamycin inducible", "clinda inducible", "clin inducible"))
|
||||
|
||||
# add all screenings
|
||||
antimicrobials <- antimicrobials |>
|
||||
bind_rows(
|
||||
antimicrobials |>
|
||||
filter(ab == "PEN") |>
|
||||
mutate(ab = "PEN-S",
|
||||
name = paste(name, "screening test"),
|
||||
cid = NA,
|
||||
atc = list(character(0)),
|
||||
atc_group1 = NA_character_,
|
||||
atc_group2 = NA_character_,
|
||||
abbreviations = list(c("pen screen")),
|
||||
synonyms = list(character(0)),
|
||||
oral_ddd = NA_real_,
|
||||
oral_units = NA_character_,
|
||||
iv_ddd = NA_real_,
|
||||
iv_units = NA_character_,
|
||||
loinc = list(character(0))),
|
||||
antimicrobials |>
|
||||
filter(ab == "OXA") |>
|
||||
mutate(ab = "OXA-S",
|
||||
name = paste(name, "screening test"),
|
||||
cid = NA,
|
||||
atc = list(character(0)),
|
||||
atc_group1 = NA_character_,
|
||||
atc_group2 = NA_character_,
|
||||
abbreviations = list(c("oxa screen")),
|
||||
synonyms = list(character(0)),
|
||||
oral_ddd = NA_real_,
|
||||
oral_units = NA_character_,
|
||||
iv_ddd = NA_real_,
|
||||
iv_units = NA_character_,
|
||||
loinc = list(character(0))),
|
||||
antimicrobials |>
|
||||
filter(ab == "PEF") |>
|
||||
mutate(ab = "PEF-S",
|
||||
name = paste(name, "screening test"),
|
||||
cid = NA,
|
||||
atc = list(character(0)),
|
||||
atc_group1 = NA_character_,
|
||||
atc_group2 = NA_character_,
|
||||
abbreviations = list(c("pef screen")),
|
||||
synonyms = list(character(0)),
|
||||
oral_ddd = NA_real_,
|
||||
oral_units = NA_character_,
|
||||
iv_ddd = NA_real_,
|
||||
iv_units = NA_character_,
|
||||
loinc = list(character(0))),
|
||||
antimicrobials |>
|
||||
filter(ab == "NAL") |>
|
||||
mutate(ab = "NAL-S",
|
||||
name = paste(name, "screening test"),
|
||||
cid = NA,
|
||||
atc = list(character(0)),
|
||||
atc_group1 = NA_character_,
|
||||
atc_group2 = NA_character_,
|
||||
abbreviations = list(c("nal screen")),
|
||||
synonyms = list(character(0)),
|
||||
oral_ddd = NA_real_,
|
||||
oral_units = NA_character_,
|
||||
iv_ddd = NA_real_,
|
||||
iv_units = NA_character_,
|
||||
loinc = list(character(0))),
|
||||
antimicrobials |>
|
||||
filter(ab == "NOR") |>
|
||||
mutate(ab = "NOR-S",
|
||||
name = paste(name, "screening test"),
|
||||
cid = NA,
|
||||
atc = list(character(0)),
|
||||
atc_group1 = NA_character_,
|
||||
atc_group2 = NA_character_,
|
||||
abbreviations = list(c("nor screen")),
|
||||
synonyms = list(character(0)),
|
||||
oral_ddd = NA_real_,
|
||||
oral_units = NA_character_,
|
||||
iv_ddd = NA_real_,
|
||||
iv_units = NA_character_,
|
||||
loinc = list(character(0))),
|
||||
antimicrobials |>
|
||||
filter(ab == "TCY") |>
|
||||
mutate(ab = "TCY-S",
|
||||
name = paste(name, "screening test"),
|
||||
cid = NA,
|
||||
atc = list(character(0)),
|
||||
atc_group1 = NA_character_,
|
||||
atc_group2 = NA_character_,
|
||||
abbreviations = list(c("tcy screen")),
|
||||
synonyms = list(character(0)),
|
||||
oral_ddd = NA_real_,
|
||||
oral_units = NA_character_,
|
||||
iv_ddd = NA_real_,
|
||||
iv_units = NA_character_,
|
||||
loinc = list(character(0)))
|
||||
)
|
||||
|
||||
|
||||
# add pretomanid
|
||||
antimicrobials <- antimicrobials %>%
|
||||
@ -918,6 +1014,8 @@ antimicrobials <- dplyr::arrange(antimicrobials, name)
|
||||
|
||||
# make all abbreviations and synonyms lower case, unique and alphabetically sorted ----
|
||||
for (i in 1:nrow(antimicrobials)) {
|
||||
atc <- as.character(sort(unique(toupper(antimicrobials[i, "atc", drop = TRUE][[1]]))))
|
||||
atc <- atc[atc != "" & atc %unlike% ":"]
|
||||
abb <- as.character(sort(unique(tolower(antimicrobials[i, "abbreviations", drop = TRUE][[1]]))))
|
||||
abb <- abb[abb != "" & abb %unlike% ":"]
|
||||
syn <- as.character(sort(unique(tolower(unname(unlist(antimicrobials[i, "synonyms", drop = TRUE]))))))
|
||||
@ -934,6 +1032,7 @@ for (i in 1:nrow(antimicrobials)) {
|
||||
# special cases
|
||||
if (antimicrobials$ab[i] == "VAN") syn <- syn[syn %unlike% "^tei?ch?o"]
|
||||
if (antimicrobials$ab[i] == "CLR") syn <- syn[syn %unlike% "^ery"]
|
||||
antimicrobials[i, "atc"][[1]] <- ifelse(length(atc) == 0, list(NA_character_), list(atc))
|
||||
antimicrobials[i, "abbreviations"][[1]] <- ifelse(length(abb) == 0, list(""), list(abb))
|
||||
antimicrobials[i, "synonyms"][[1]] <- ifelse(length(syn) == 0, list(""), list(syn))
|
||||
if ("loinc" %in% colnames(antimicrobials)) {
|
||||
|
||||
@ -222,7 +222,7 @@ unknown <- breakpoints %>%
|
||||
breakpoints %>%
|
||||
filter(code %in% unknown) %>%
|
||||
count(GUIDELINES, YEAR, ORGANISM_CODE, BREAKPOINT_TYPE, sort = TRUE)
|
||||
# 2024-06-14: these codes are currently: clu, kma, fso, tyi. No clue (are not in MO list of WHONET), and they are only ECOFFs, so remove them:
|
||||
# 2025-03-11: these codes are currently: clu, kma, fso, tyi. No clue (are not in MO list of WHONET), and they are only ECOFFs, so remove them:
|
||||
breakpoints <- breakpoints %>%
|
||||
filter(!is.na(mo))
|
||||
|
||||
@ -235,7 +235,7 @@ breakpoints %>%
|
||||
filter(!WHONET_ABX_CODE %in% whonet_antibiotics$WHONET_ABX_CODE) %>%
|
||||
pull(WHONET_ABX_CODE) %>%
|
||||
unique()
|
||||
# they are at the moment all old codes that have the right replacements in `antimicrobials`, so we can use as.ab()
|
||||
# they are at the moment all old codes ("CFC", "ROX", "FIX") that have the right replacements in `antimicrobials`, so we can use as.ab()
|
||||
|
||||
|
||||
## Build new breakpoints table ----
|
||||
@ -290,25 +290,36 @@ breakpoints_new[which(breakpoints_new$method == "DISK"), "breakpoint_R"] <- as.d
|
||||
# regarding animal breakpoints, CLSI has adults and foals for horses, but only for amikacin - only keep adult horses
|
||||
breakpoints_new %>%
|
||||
filter(host %like% "foal") %>%
|
||||
View()
|
||||
count(guideline, host)
|
||||
breakpoints_new <- breakpoints_new %>%
|
||||
filter(host %unlike% "foal") %>%
|
||||
mutate(host = ifelse(host %like% "horse", "horse", host))
|
||||
|
||||
# FIXES FOR WHONET ERRORS ----
|
||||
m <- unique(as.double(as.mic(levels(as.mic(1)))))
|
||||
|
||||
# WHONET has no >1024 but instead uses 1025, 513, etc, so as.mic() cannot be used to clean.
|
||||
# instead, clean based on MIC factor levels
|
||||
m <- unique(as.double(as.mic(levels(as.mic(1)))))
|
||||
breakpoints_new[which(breakpoints_new$breakpoint_R == 129), "breakpoint_R"] <- m[which(m == 128) + 1]
|
||||
breakpoints_new[which(breakpoints_new$breakpoint_R == 257), "breakpoint_R"] <- m[which(m == 256) + 1]
|
||||
breakpoints_new[which(breakpoints_new$breakpoint_R == 513), "breakpoint_R"] <- m[which(m == 512) + 1]
|
||||
breakpoints_new[which(breakpoints_new$breakpoint_R == 1025), "breakpoint_R"] <- m[which(m == 1024) + 1]
|
||||
|
||||
# a lot of R breakpoints are missing, though none of the S breakpoints are missing:
|
||||
anyNA(breakpoints_new$breakpoint_S)
|
||||
|
||||
breakpoints_new %>%
|
||||
filter(is.na(breakpoint_R)) %>%
|
||||
count(guideline, host) |>
|
||||
pivot_wider(names_from = host,
|
||||
values_from = n,
|
||||
values_fill = list(n = 0)) |>
|
||||
View()
|
||||
|
||||
breakpoints_new[which(breakpoints_new$method == "MIC" &
|
||||
is.na(breakpoints_new$breakpoint_S)), "breakpoint_S"] <- min(m)
|
||||
breakpoints_new[which(breakpoints_new$method == "MIC" &
|
||||
is.na(breakpoints_new$breakpoint_R)), "breakpoint_R"] <- max(m)
|
||||
is.na(breakpoints_new$breakpoint_R)), "breakpoint_R"] <- max(m)
|
||||
# raise these one higher valid MIC factor level:
|
||||
breakpoints_new[which(breakpoints_new$breakpoint_R == 129), "breakpoint_R"] <- 128
|
||||
breakpoints_new[which(breakpoints_new$breakpoint_R == 257), "breakpoint_R"] <- 256
|
||||
breakpoints_new[which(breakpoints_new$breakpoint_R == 513), "breakpoint_R"] <- 512
|
||||
breakpoints_new[which(breakpoints_new$breakpoint_R == 1025), "breakpoint_R"] <- 1024
|
||||
|
||||
|
||||
# fix streptococci in WHONET table of EUCAST: Strep A, B, C and G must only include these groups and not all streptococci:
|
||||
breakpoints_new$mo[breakpoints_new$mo == "B_STRPT" & breakpoints_new$ref_tbl %like% "^strep.* a.* b.*c.*g"] <- as.mo("B_STRPT_ABCG")
|
||||
|
||||
Binary file not shown.
Binary file not shown.
Reference in New Issue
Block a user