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Built site for AMR: 1.8.2.9096@98e62c9
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@ -38,7 +38,7 @@
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9095</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9096</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -195,7 +195,7 @@ treatment evaluation in any setting.</p>
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<p>After installing this package, R knows ~52,000 distinct microbial
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species and all ~600 antibiotic, antimycotic and antiviral drugs by name
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and code (including ATC, EARS-Net, ASIARS-Net, PubChem, LOINC and SNOMED
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CT), and knows all about valid R/SI and MIC values. The integral
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CT), and knows all about valid SIR and MIC values. The integral
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breakpoint guidelines from CLSI and EUCAST are included from the last 10
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years. It supports and can read any data format, including WHONET
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data.</p>
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@ -239,10 +239,10 @@ microorganism based on a SNOMED code</li>
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<li>Getting LOINC codes of an antibiotic, or getting properties of an
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antibiotic based on a LOINC code</li>
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<li>Machine reading the EUCAST and CLSI guidelines from 2011-2020 to
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translate MIC values and disk diffusion diameters to R/SI</li>
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translate MIC values and disk diffusion diameters to SIR</li>
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<li>Principal component analysis for AMR</li>
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</ul>
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<p>All reference data sets (about microorganisms, antibiotics, R/SI
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<p>All reference data sets (about microorganisms, antibiotics, SIR
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interpretation, EUCAST rules, etc.) in this <code>AMR</code> package are
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publicly and freely available. We continually export our data sets to
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formats for use in R, SPSS, SAS, Stata and Excel. We also supply flat
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