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@ -10,7 +10,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9095</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9096</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -140,7 +140,7 @@
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">mean_amr_distance</span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span><span class="op">)</span></span>
<span></span>
<span><span class="co"># S3 method for rsi</span></span>
<span><span class="co"># S3 method for sir</span></span>
<span><span class="fu">mean_amr_distance</span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span>, combine_SI <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span>
<span></span>
<span><span class="co"># S3 method for data.frame</span></span>
@ -152,7 +152,7 @@
<div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>x</dt>
<dd><p>a vector of class <a href="as.rsi.html">rsi</a>, <a href="as.mic.html">mic</a> or <a href="as.disk.html">disk</a>, or a <a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame</a> containing columns of any of these classes</p></dd>
<dd><p>a vector of class <a href="as.sir.html">sir</a>, <a href="as.mic.html">mic</a> or <a href="as.disk.html">disk</a>, or a <a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame</a> containing columns of any of these classes</p></dd>
<dt>...</dt>
@ -175,7 +175,7 @@
<h2 id="details">Details<a class="anchor" aria-label="anchor" href="#details"></a></h2>
<p>The mean AMR distance is effectively <a href="https://en.wikipedia.org/wiki/Standard_score" class="external-link">the Z-score</a>; a normalised numeric value to compare AMR test results which can help to identify similar isolates, without comparing antibiograms by hand.</p>
<p>MIC values (see <code><a href="as.mic.html">as.mic()</a></code>) are transformed with <code><a href="https://rdrr.io/r/base/Log.html" class="external-link">log2()</a></code> first; their distance is thus calculated as <code>(log2(x) - mean(log2(x))) / sd(log2(x))</code>.</p>
<p>R/SI values (see <code><a href="as.rsi.html">as.rsi()</a></code>) are transformed using <code>"S"</code> = 1, <code>"I"</code> = 2, and <code>"R"</code> = 3. If <code>combine_SI</code> is <code>TRUE</code> (default), the <code>"I"</code> will be considered to be 1.</p>
<p>SIR values (see <code><a href="as.sir.html">as.sir()</a></code>) are transformed using <code>"S"</code> = 1, <code>"I"</code> = 2, and <code>"R"</code> = 3. If <code>combine_SI</code> is <code>TRUE</code> (default), the <code>"I"</code> will be considered to be 1.</p>
<p>For data sets, the mean AMR distance will be calculated per column, after which the mean per row will be returned, see <em>Examples</em>.</p>
<p>Use <code>amr_distance_from_row()</code> to subtract distances from the distance of one row, see <em>Examples</em>.</p>
</div>
@ -188,72 +188,73 @@
<div class="section level2">
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">rsi</span> <span class="op">&lt;-</span> <span class="fu"><a href="random.html">random_rsi</a></span><span class="op">(</span><span class="fl">10</span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="va">rsi</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class 'rsi'</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] S S S I I R S S I I</span>
<span class="r-in"><span><span class="fu">mean_amr_distance</span><span class="op">(</span><span class="va">rsi</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] -0.3162278 -0.3162278 -0.3162278 -0.3162278 -0.3162278 2.8460499</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [7] -0.3162278 -0.3162278 -0.3162278 -0.3162278</span>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">sir</span> <span class="op">&lt;-</span> <span class="fu"><a href="random.html">random_sir</a></span><span class="op">(</span><span class="fl">10</span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="va">sir</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class 'sir'</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] R I S S I R S R R I</span>
<span class="r-in"><span><span class="fu">mean_amr_distance</span><span class="op">(</span><span class="va">sir</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 1.1618950 -0.7745967 -0.7745967 -0.7745967 -0.7745967 1.1618950</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [7] -0.7745967 1.1618950 1.1618950 -0.7745967</span>
<span class="r-in"><span></span></span>
<span class="r-in"><span><span class="va">mic</span> <span class="op">&lt;-</span> <span class="fu"><a href="random.html">random_mic</a></span><span class="op">(</span><span class="fl">10</span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="va">mic</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class 'mic'</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 0.25 16 0.01 0.002 2 0.002 0.025 &gt;=256 16 16 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 8 4 &lt;=0.0625 256 32 1 &lt;=0.0625 256 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [9] 64 0.5 </span>
<span class="r-in"><span><span class="fu">mean_amr_distance</span><span class="op">(</span><span class="va">mic</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] -0.1484568 0.8300945 -0.9058320 -1.2845196 0.3408189 -1.2845196</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [7] -0.6902363 1.4824620 0.8300945 0.8300945</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 0.15561961 -0.06669412 -1.40057649 1.26718825 0.60024707 -0.51132157</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [7] -1.40057649 1.26718825 0.82256079 -0.73363530</span>
<span class="r-in"><span><span class="co"># equal to the Z-score of their log2:</span></span></span>
<span class="r-in"><span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/Log.html" class="external-link">log2</a></span><span class="op">(</span><span class="va">mic</span><span class="op">)</span> <span class="op">-</span> <span class="fu"><a href="https://rdrr.io/r/base/mean.html" class="external-link">mean</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/Log.html" class="external-link">log2</a></span><span class="op">(</span><span class="va">mic</span><span class="op">)</span><span class="op">)</span><span class="op">)</span> <span class="op">/</span> <span class="fu"><a href="https://rdrr.io/r/stats/sd.html" class="external-link">sd</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/Log.html" class="external-link">log2</a></span><span class="op">(</span><span class="va">mic</span><span class="op">)</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] -0.1484568 0.8300945 -0.9058320 -1.2845196 0.3408189 -1.2845196</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [7] -0.6902363 1.4824620 0.8300945 0.8300945</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 0.15561961 -0.06669412 -1.40057649 1.26718825 0.60024707 -0.51132157</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [7] -1.40057649 1.26718825 0.82256079 -0.73363530</span>
<span class="r-in"><span></span></span>
<span class="r-in"><span><span class="va">disk</span> <span class="op">&lt;-</span> <span class="fu"><a href="random.html">random_disk</a></span><span class="op">(</span><span class="fl">10</span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="va">disk</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class 'disk'</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 44 8 43 18 44 10 32 16 14 6</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 47 26 16 48 35 11 26 27 44 49</span>
<span class="r-in"><span><span class="fu">mean_amr_distance</span><span class="op">(</span><span class="va">disk</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 1.3116316 -0.9917215 1.2476496 -0.3519012 1.3116316 -0.8637574</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [7] 0.5438473 -0.4798652 -0.6078293 -1.1196855</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 1.0232507 -0.5007397 -1.2264494 1.0958217 0.1523990 -1.5893042</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [7] -0.5007397 -0.4281687 0.8055378 1.1683926</span>
<span class="r-in"><span></span></span>
<span class="r-in"><span><span class="va">y</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame</a></span><span class="op">(</span></span></span>
<span class="r-in"><span> id <span class="op">=</span> <span class="va">LETTERS</span><span class="op">[</span><span class="fl">1</span><span class="op">:</span><span class="fl">10</span><span class="op">]</span>,</span></span>
<span class="r-in"><span> amox <span class="op">=</span> <span class="fu"><a href="random.html">random_rsi</a></span><span class="op">(</span><span class="fl">10</span>, ab <span class="op">=</span> <span class="st">"amox"</span>, mo <span class="op">=</span> <span class="st">"Escherichia coli"</span><span class="op">)</span>,</span></span>
<span class="r-in"><span> amox <span class="op">=</span> <span class="fu"><a href="random.html">random_sir</a></span><span class="op">(</span><span class="fl">10</span>, ab <span class="op">=</span> <span class="st">"amox"</span>, mo <span class="op">=</span> <span class="st">"Escherichia coli"</span><span class="op">)</span>,</span></span>
<span class="r-in"><span> cipr <span class="op">=</span> <span class="fu"><a href="random.html">random_disk</a></span><span class="op">(</span><span class="fl">10</span>, ab <span class="op">=</span> <span class="st">"cipr"</span>, mo <span class="op">=</span> <span class="st">"Escherichia coli"</span><span class="op">)</span>,</span></span>
<span class="r-in"><span> gent <span class="op">=</span> <span class="fu"><a href="random.html">random_mic</a></span><span class="op">(</span><span class="fl">10</span>, ab <span class="op">=</span> <span class="st">"gent"</span>, mo <span class="op">=</span> <span class="st">"Escherichia coli"</span><span class="op">)</span>,</span></span>
<span class="r-in"><span> tobr <span class="op">=</span> <span class="fu"><a href="random.html">random_mic</a></span><span class="op">(</span><span class="fl">10</span>, ab <span class="op">=</span> <span class="st">"tobr"</span>, mo <span class="op">=</span> <span class="st">"Escherichia coli"</span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="va">y</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> id amox cipr gent tobr</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 1 A R 25 4 2</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 2 B S 28 8 2</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 3 C I 27 16 &gt;=4</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 4 D R 25 1 0.5</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 5 E S 29 &lt;=0.25 1</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 6 F I 30 1 0.5</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 7 G I 31 4 &gt;=4</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 8 H I 31 16 &gt;=4</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 9 I R 19 1 &lt;=0.25</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 10 J I 19 8 2</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 1 A R 22 2 &lt;=0.25</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 2 B S 26 1 &gt;=8</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 3 C S 17 1 2</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 4 D I 17 2 0.5</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 5 E R 19 0.5 0.5</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 6 F S 23 1 1</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 7 G S 21 &lt;=0.25 4</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 8 H I 26 2 1</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 9 I I 19 2 1</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 10 J S 18 1 &gt;=8</span>
<span class="r-in"><span><span class="fu">mean_amr_distance</span><span class="op">(</span><span class="va">y</span><span class="op">)</span></span></span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Calculating mean AMR distance based on columns "amox", "cipr", "gent" and</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> "tobr"</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 0.4205821 0.1957997 0.4383306 -0.1767834 -0.5439764 -0.4135734</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [7] 0.4143153 0.6629379 -0.6880658 -0.3095667</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 0.42479243 0.60367076 -0.35088351 -0.39086870 -0.15337200 -0.05446405</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [7] -0.41325021 0.41799269 -0.09780504 0.01418764</span>
<span class="r-in"><span><span class="va">y</span><span class="op">$</span><span class="va">amr_distance</span> <span class="op">&lt;-</span> <span class="fu">mean_amr_distance</span><span class="op">(</span><span class="va">y</span>, <span class="fu">where</span><span class="op">(</span><span class="va">is.mic</span><span class="op">)</span><span class="op">)</span></span></span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Calculating mean AMR distance based on columns "gent" and "tobr"</span>
<span class="r-in"><span><span class="va">y</span><span class="op">[</span><span class="fu"><a href="https://rdrr.io/r/base/order.html" class="external-link">order</a></span><span class="op">(</span><span class="va">y</span><span class="op">$</span><span class="va">amr_distance</span><span class="op">)</span>, <span class="op">]</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> id amox cipr gent tobr amr_distance</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 9 I R 19 1 &lt;=0.25 -1.2696534</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 5 E S 29 &lt;=0.25 1 -1.0694127</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 4 D R 25 1 0.5 -0.9209105</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 6 F I 30 1 0.5 -0.9209105</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 1 A R 25 4 2 0.2738205</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 2 B S 28 8 2 0.5224431</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 10 J I 19 8 2 0.5224431</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 7 G I 31 4 &gt;=4 0.6225634</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 3 C I 27 16 &gt;=4 1.1198086</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 8 H I 31 16 &gt;=4 1.1198086</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 5 E R 19 0.5 0.5 -0.99015989</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 7 G S 21 &lt;=0.25 4 -0.61880376</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 1 A R 22 2 &lt;=0.25 -0.27594337</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 6 F S 23 1 1 -0.19597299</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 4 D I 17 2 0.5 0.01544239</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 3 C S 17 1 2 0.09541277</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 8 H I 26 2 1 0.30682815</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 9 I I 19 2 1 0.30682815</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 2 B S 26 1 &gt;=8 0.67818428</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 10 J S 18 1 &gt;=8 0.67818428</span>
<span class="r-in"><span></span></span>
<span class="r-in"><span><span class="kw">if</span> <span class="op">(</span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">require</a></span><span class="op">(</span><span class="st"><a href="https://dplyr.tidyverse.org" class="external-link">"dplyr"</a></span><span class="op">)</span><span class="op">)</span> <span class="op">{</span></span></span>
<span class="r-in"><span> <span class="va">y</span> <span class="op"><a href="https://magrittr.tidyverse.org/reference/pipe.html" class="external-link">%&gt;%</a></span></span></span>
@ -266,16 +267,16 @@
<span class="r-msg co"><span class="r-pr">#&gt;</span> Calculating mean AMR distance based on columns "amox", "cipr", "gent" and</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> "tobr"</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> id amox cipr gent tobr amr_distance check_id_C</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 1 C I 27 16 &gt;=4 0.4383306 0.00000000</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 2 A R 25 4 2 0.4205821 0.01774851</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 3 G I 31 4 &gt;=4 0.4143153 0.02401530</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 4 H I 31 16 &gt;=4 0.6629379 0.22460728</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 5 B S 28 8 2 0.1957997 0.24253093</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 6 D R 25 1 0.5 -0.1767834 0.61511400</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 7 J I 19 8 2 -0.3095667 0.74789731</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 8 F I 30 1 0.5 -0.4135734 0.85190407</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 9 E S 29 &lt;=0.25 1 -0.5439764 0.98230701</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 10 I R 19 1 &lt;=0.25 -0.6880658 1.12639638</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 1 C S 17 1 2 -0.35088351 0.00000000</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 2 D I 17 2 0.5 -0.39086870 0.03998519</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 3 G S 21 &lt;=0.25 4 -0.41325021 0.06236670</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 4 E R 19 0.5 0.5 -0.15337200 0.19751151</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 5 I I 19 2 1 -0.09780504 0.25307847</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 6 F S 23 1 1 -0.05446405 0.29641946</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 7 J S 18 1 &gt;=8 0.01418764 0.36507115</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 8 H I 26 2 1 0.41799269 0.76887620</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 9 A R 22 2 &lt;=0.25 0.42479243 0.77567594</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 10 B S 26 1 &gt;=8 0.60367076 0.95455427</span>
<span class="r-in"><span><span class="kw">if</span> <span class="op">(</span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">require</a></span><span class="op">(</span><span class="st"><a href="https://dplyr.tidyverse.org" class="external-link">"dplyr"</a></span><span class="op">)</span><span class="op">)</span> <span class="op">{</span></span></span>
<span class="r-in"><span> <span class="co"># support for groups</span></span></span>
<span class="r-in"><span> <span class="va">example_isolates</span> <span class="op"><a href="https://magrittr.tidyverse.org/reference/pipe.html" class="external-link">%&gt;%</a></span></span></span>
@ -292,7 +293,7 @@
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 63 × 5</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># Groups: mo [4]</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> mo TCY IPM MEM dist</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494; font-style: italic;">&lt;mo&gt;</span> <span style="color: #949494; font-style: italic;">&lt;rsi&gt;</span> <span style="color: #949494; font-style: italic;">&lt;rsi&gt;</span> <span style="color: #949494; font-style: italic;">&lt;rsi&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494; font-style: italic;">&lt;mo&gt;</span> <span style="color: #949494; font-style: italic;">&lt;sir&gt;</span> <span style="color: #949494; font-style: italic;">&lt;sir&gt;</span> <span style="color: #949494; font-style: italic;">&lt;sir&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 1</span> B_ENTRC_AVIM S S NA 0 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 2</span> B_ENTRC_AVIM S S NA 0 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 3</span> B_ENTRC_CSSL NA S NA <span style="color: #BB0000;">NA</span> </span>