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(v0.7.1.9075) new microorganism codes

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dr. M.S. (Matthijs) Berends
2019-09-18 15:46:09 +02:00
parent f553a08a7b
commit e2aa4f996b
53 changed files with 636 additions and 475 deletions
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4
tests/testthat/test-freq.R
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@ -26,8 +26,8 @@ test_that("frequency table works", {
# mo
expect_true(is.freq(freq(example_isolates$mo)))
# for this to work, the output of mo_gramstain() is to be expected as follows:
expect_equal(mo_gramstain("B_ESCHR_COL", language = NULL), "Gram-negative")
expect_equal(mo_gramstain("B_STPHY_AUR", language = NULL), "Gram-positive")
expect_equal(mo_gramstain("B_ESCHR_COLI", language = NULL), "Gram-negative")
expect_equal(mo_gramstain("B_STPHY_AURS", language = NULL), "Gram-positive")
# rsi
expect_true(is.freq(freq(example_isolates$AMX)))