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(v0.7.1.9075) new microorganism codes

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This commit is contained in:
dr. M.S. (Matthijs) Berends
2019-09-18 15:46:09 +02:00
parent f553a08a7b
commit e2aa4f996b
53 changed files with 636 additions and 475 deletions
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14
tests/testthat/test-join_microorganisms.R
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@ -45,17 +45,17 @@ test_that("joins work", {
expect_true(nrow(unjoined) < nrow(full))
expect_equal(nrow(inner_join_microorganisms("B_ESCHR_COL")), 1)
expect_equal(nrow(inner_join_microorganisms("B_ESCHR_COL", by = c("mo" = "mo"))), 1)
expect_equal(nrow(inner_join_microorganisms("B_ESCHR_COLI")), 1)
expect_equal(nrow(inner_join_microorganisms("B_ESCHR_COLI", by = c("mo" = "mo"))), 1)
expect_warning(inner_join_microorganisms("Escherichia", by = c("mo" = "genus")))
expect_equal(nrow(left_join_microorganisms("B_ESCHR_COL")), 1)
expect_equal(nrow(left_join_microorganisms("B_ESCHR_COLI")), 1)
expect_warning(left_join_microorganisms("Escherichia", by = c("mo" = "genus")))
expect_equal(nrow(semi_join_microorganisms("B_ESCHR_COL")), 1)
expect_equal(nrow(anti_join_microorganisms("B_ESCHR_COL")), 0)
expect_equal(nrow(semi_join_microorganisms("B_ESCHR_COLI")), 1)
expect_equal(nrow(anti_join_microorganisms("B_ESCHR_COLI")), 0)
expect_warning(right_join_microorganisms("B_ESCHR_COL"))
expect_warning(full_join_microorganisms("B_ESCHR_COL"))
expect_warning(right_join_microorganisms("B_ESCHR_COLI"))
expect_warning(full_join_microorganisms("B_ESCHR_COLI"))
})