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(v0.7.1.9075) new microorganism codes

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This commit is contained in:
dr. M.S. (Matthijs) Berends
2019-09-18 15:46:09 +02:00
parent f553a08a7b
commit e2aa4f996b
53 changed files with 636 additions and 475 deletions
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10
tests/testthat/test-rsi.R
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@ -58,13 +58,13 @@ test_that("rsi works", {
test_that("mic2rsi works", {
expect_equal(as.character(
as.rsi(x = as.mic(0.125),
mo = "B_STRPT_PNE",
mo = "B_STRPT_PNMN",
ab = "AMX",
guideline = "EUCAST")),
"S")
expect_equal(as.character(
as.rsi(x = as.mic(4),
mo = "B_STRPT_PNE",
mo = "B_STRPT_PNMN",
ab = "AMX",
guideline = "EUCAST")),
"R")
@ -80,19 +80,19 @@ test_that("mic2rsi works", {
test_that("disk2rsi works", {
expect_equal(as.character(
as.rsi(x = as.disk(22),
mo = "B_STRPT_PNE",
mo = "B_STRPT_PNMN",
ab = "ERY",
guideline = "CLSI")),
"S")
expect_equal(as.character(
as.rsi(x = as.disk(18),
mo = "B_STRPT_PNE",
mo = "B_STRPT_PNMN",
ab = "ERY",
guideline = "CLSI")),
"I")
expect_equal(as.character(
as.rsi(x = as.disk(10),
mo = "B_STRPT_PNE",
mo = "B_STRPT_PNMN",
ab = "ERY",
guideline = "CLSI")),
"R")