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(v0.7.1.9066) bug-drug fix

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dr. M.S. (Matthijs) Berends
2019-08-27 23:00:00 +02:00
parent 248638ad91
commit e2b78fa428
12 changed files with 24 additions and 17 deletions
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4
man/bug_drug_combinations.Rd
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@ -11,7 +11,7 @@
bug_drug_combinations(x, col_mo = NULL, minimum = 30)
\method{format}{bug_drug_combinations}(x, combine_IR = FALSE,
add_ab_group = TRUE)
add_ab_group = TRUE, ...)
}
\arguments{
\item{x}{data with antibiotic columns, like e.g. \code{AMX} and \code{AMC}}
@ -23,6 +23,8 @@ bug_drug_combinations(x, col_mo = NULL, minimum = 30)
\item{combine_IR}{logical to indicate whether values R and I should be summed}
\item{add_ab_group}{logical to indicate where the group of the antimicrobials must be included as a first column}
\item{...}{argumments passed on to \code{\link{mo_name}}}
}
\description{
Determine antimicrobial resistance (AMR) of all bug-drug combinations in your data set where at least 30 (default) isolates are available per species. Use \code{format} on the result to prettify it to a printable format, see Examples.