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@ -10,7 +10,7 @@
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9006</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9007</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -193,42 +193,42 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 128 8 2 64 64 0.002 4 0.025 <=0.001</span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.01 16 0.5 <=0.001 1 64 0.5 0.002 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.025 8 0.025 8 >=256 0.005 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 64 16 2 64 0.005 2 0.0625 32 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 128 <=0.001 0.025 0.5 2 1 2 0.5 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 4 0.0625 1 0.25 >=256 8 1 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 17 34 17 49 40 28 47 24 44 6 31 46 41 47 36 15 48 49 44 50 18 49 44 20 27</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 38 33 42 7 18 50 44 28 17 8 35 37 48 17 43 41 46 41 36 22 43 50 8 40 7</span>
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<span class="r-in"><span><span class="fu">random_sir</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S S S S S I S R R R I R I S R I I I S I S S I R S</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] I I I I R R S S R I R S R I I R S I I S S I S R I</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 64 0.25 0.125 <=0.001 0.005 2 <=0.001 0.005 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 2 32 0.01 0.005 0.25 <=0.001 0.125 2 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.025 0.25 0.005 4 0.025 8 64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] >=128 0.002 0.01 0.025 >=128 0.025 4 0.01 4 0.0625</span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.5 2 0.001 0.025 0.025 0.0625 0.25 4 1 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.025 0.125 0.5 1 2 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 4 >=32 1 8 >=32 0.5 4 4 8 0.5 16 8 4 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 16 4 1 4 0.5 0.5 >=32 2 >=32 >=32</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 64 8 4 8 16 8 <=1 <=1 <=1 64 16 4 2 64 2 64 16 64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [20] 16 2 64 8 8 8 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 0.25 2 4 2 0.5 0.25 0.0625 0.125 >=8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 4 4 0.125 2 0.5 2 0.125 >=8 1 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 4 0.5 0.125 0.25 >=8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.025 0.025 2 0.025 2 0.025 >=8 1 0.0625 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 4 4 0.0625 >=8 4 0.025 2 1 >=8 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 1 4 0.25 0.5 0.5 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 36 47 48 24 19 50 34 23 39 40 21 36 25 37 31 43 8 45 47 37 22 48 12 21 43</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 40 32 29 24 30 25 28 46 35 17 16 45 35 30 48 17 45 20 39 41 18 24 48 22 41</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 11 11 13 13 11 11 14 11 15 11 12 15 14 17 15 17 17 12 13 17 12 13 11 11 16</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 12 11 11 11 12 12 11 16 12 17 15 13 11 13 16 15 16 15 13 12 16 11 13 15 16</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 25 22 20 19 27 17 24 18 27 15 18 22 18 21 24 15 22 19 21 20 21 18 20 21 23</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 26 20 25 26 22 18 24 23 23 23 26 21 25 16 17 24 26 22 22 20 18 27 23 25 26</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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