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added mo_shortname

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dr. M.S. (Matthijs) Berends
2018-09-05 10:51:46 +02:00
parent 790bd1622d
commit e39a9a8b05
8 changed files with 88 additions and 12 deletions
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tests/testthat/test-mo.R
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@@ -14,6 +14,8 @@ test_that("as.mo works", {
expect_equal(as.character(as.mo("K. pneu rhino")), "KLEPNERH") # K. pneumoniae subspp. rhinoscleromatis
expect_equal(as.character(as.mo("Bartonella")), "BAR")
expect_equal(as.character(as.mo("S. pyo")), "STCPYO") # not Actinomyces pyogenes
expect_equal(as.character(as.mo("P. aer")), "PSEAER") # not Pasteurella aerogenes
expect_equal(as.character(as.mo("Negative rods")), "GNR")