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(v1.7.1.9028) fix unit test
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Package: AMR
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Version: 1.7.1.9027
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Date: 2021-08-19
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Version: 1.7.1.9028
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Date: 2021-08-20
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Title: Antimicrobial Resistance Data Analysis
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Description: Functions to simplify and standardise antimicrobial resistance (AMR)
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data analysis and to work with microbial and antimicrobial properties by
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4
NEWS.md
4
NEWS.md
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# `AMR` 1.7.1.9027
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## <small>Last updated: 19 August 2021</small>
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# `AMR` 1.7.1.9028
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## <small>Last updated: 20 August 2021</small>
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### Breaking changes
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* Removed `p_symbol()` and all `filter_*()` functions (except for `filter_first_isolate()`), which were all deprecated in a previous package version
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</button>
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<span class="navbar-brand">
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<a class="navbar-link" href="../index.html">AMR (for R)</a>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.7.1.9027</span>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.7.1.9028</span>
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</span>
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</div>
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@ -190,7 +190,7 @@
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<div class="page-header toc-ignore">
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<h1 data-toc-skip>Data sets for download / own use</h1>
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<h4 data-toc-skip class="date">19 August 2021</h4>
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<h4 data-toc-skip class="date">20 August 2021</h4>
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<small class="dont-index">Source: <a href="https://github.com/msberends/AMR/blob/master/vignettes/datasets.Rmd" class="external-link"><code>vignettes/datasets.Rmd</code></a></small>
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<div class="hidden name"><code>datasets.Rmd</code></div>
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@ -92,7 +92,7 @@
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</button>
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<span class="navbar-brand">
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<a class="navbar-link" href="../index.html">AMR (for R)</a>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.7.1.9027</span>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.7.1.9028</span>
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</span>
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</div>
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<small>Source: <a href='https://github.com/msberends/AMR/blob/master/NEWS.md'><code>NEWS.md</code></a></small>
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</div>
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<div id="amr-1719027" class="section level1">
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<h1 class="page-header" data-toc-text="1.7.1.9027">
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<a href="#amr-1719027" class="anchor" aria-hidden="true"></a><small> Unreleased </small><code>AMR</code> 1.7.1.9027</h1>
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<div id="last-updated-19-august-2021" class="section level2">
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<div id="amr-1719028" class="section level1">
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<h1 class="page-header" data-toc-text="1.7.1.9028">
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<a href="#amr-1719028" class="anchor" aria-hidden="true"></a><small> Unreleased </small><code>AMR</code> 1.7.1.9028</h1>
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<div id="last-updated-20-august-2021" class="section level2">
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<h2 class="hasAnchor">
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<a href="#last-updated-19-august-2021" class="anchor" aria-hidden="true"></a><small>Last updated: 19 August 2021</small>
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<a href="#last-updated-20-august-2021" class="anchor" aria-hidden="true"></a><small>Last updated: 20 August 2021</small>
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</h2>
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<div id="breaking-changes" class="section level3">
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<h3 class="hasAnchor">
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# ==================================================================== #
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expect_identical(ab_name("AMX", language = NULL), "Amoxicillin")
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expect_identical(ab_name("AMX", language = NULL, snake_case = TRUE), "amoxicillin")
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expect_identical(ab_atc("AMX"), "J01CA04")
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expect_identical(ab_cid("AMX"), as.integer(33613))
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@ -121,9 +121,9 @@ expect_equal(mo_name("test", reference_df = data.frame(col1 = "test", mo = "B_ES
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"Escherichia coli")
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if (AMR:::pkg_is_available("dplyr")) {
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expect_equal(example_isolates %>% filter(mo_is_gram_negative()) %>% nrow(),
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730)
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730, tolerance = 0.5)
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expect_equal(example_isolates %>% filter(mo_is_gram_positive()) %>% nrow(),
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1238)
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1238, tolerance = 0.5)
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expect_equal(example_isolates %>% filter(mo_is_intrinsic_resistant(ab = "Vancomycin")) %>% nrow(),
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710)
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710, tolerance = 0.5)
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}
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