P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-08-13 12:45:14 +02:00
Code Releases Activity

Merge branch 'premaster'

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2019-08-07 16:27:37 +02:00
parent 3e9a263fc4 bfa92eb166
commit e5cc09dbc0
42 changed files with 959 additions and 610 deletions
Download Patch File Download Diff File Expand all files Collapse all files

16
tests/testthat/test-resistance_predict.R
View File

@ -32,7 +32,7 @@ test_that("prediction of rsi works", {
# AMX resistance will increase according to data set `septic_patients`
expect_true(AMX_R[3] < AMX_R[20])
x <- resistance_predict(septic_patients, col_ab = "AMX", year_min = 2010)
x <- resistance_predict(septic_patients, col_ab = "AMX", year_min = 2010, model = "binomial")
plot(x)
ggplot_rsi_predict(x)
expect_error(ggplot_rsi_predict(septic_patients))
@ -61,19 +61,27 @@ test_that("prediction of rsi works", {
col_date = "date",
info = TRUE))
expect_error(rsi_predict(x = filter(septic_patients, mo == "B_ESCHR_COL"),
model = "binomial",
col_ab = "NOT EXISTING COLUMN",
col_date = "date",
info = TRUE))
expect_error(rsi_predict(x = filter(septic_patients, mo == "B_ESCHR_COL"),
model = "binomial",
col_ab = "AMX",
col_date = "NOT EXISTING COLUMN",
info = TRUE))
expect_error(rsi_predict(x = filter(septic_patients, mo == "B_ESCHR_COL"),
col_ab = "AMX",
col_date = "NOT EXISTING COLUMN",
info = TRUE))
expect_error(rsi_predict(x = filter(septic_patients, mo == "B_ESCHR_COL"),
col_ab = "AMX",
col_date = "date",
info = TRUE))
# almost all E. coli are MEM S in the Netherlands :)
expect_error(resistance_predict(x = filter(septic_patients, mo == "B_ESCHR_COL"),
model = "binomial",
col_ab = "MEM",
col_date = "date",
info = TRUE))
expect_error(portion_df(c("A", "B", "C")))
expect_error(portion_df(septic_patients[,"date"]))
})