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@ -10,7 +10,7 @@
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9081</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9082</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -183,42 +183,42 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 1 16 0.005 128 >=256 >=256 1 1 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 32 0.002 0.01 0.125 0.0625 32 0.001 128 0.001 0.005 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.25 1 2 32 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 0.002 0.5 0.5 0.125 0.25 32 0.0625 0.002 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 16 0.125 8 0.002 4 8 0.0625 8 8 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.001 0.002 0.01 4 64 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 34 41 31 43 38 34 43 31 11 44 49 9 45 6 36 43 48 43 34 47 16 35 41 40 20</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 24 44 41 19 45 23 10 41 41 41 44 35 33 48 10 19 33 28 22 17 41 32 49 45 10</span>
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<span class="r-in"><span><span class="fu">random_rsi</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'rsi'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R R I I S S I S I I S S S R I I R I S S I R R S S</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S I R S S S I I R I S S I I R I R S S R I I R R S</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] <=0.002 16 0.5 0.005 4 0.0625 16 0.005 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] >=64 0.25 0.005 >=64 2 16 0.0625 0.25 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] >=64 0.5 32 16 4 1 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.01 32 8 2 0.005 0.002 0.005 0.025 1 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.125 1 0.01 1 4 0.0625 0.025 0.5 0.125 >=64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 16 0.5 1 4 0.001 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 32 1 1 2 32 16 2 0.25 0.25 0.25 1 16 8 4 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 2 2 16 >=64 0.25 >=64 0.25 16 8 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] <=1 <=1 <=1 4 4 16 16 4 <=1 8 4 16 <=1 2 2 16 8 16 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [20] 4 2 4 4 4 4 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.25 0.25 16 0.25 2 2 0.25 8 0.125 0.0625</span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.0625 8 0.5 2 2 0.5 0.125 4 1 0.0625</span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.025 0.025 8 0.025 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 >=16 0.125 0.0625 1 0.0625 0.125 2 >=16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 2 <=0.025 1 2 8 1 0.25 0.0625 >=16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 8 1 0.5 >=16 0.125 >=16 8 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 49 12 30 41 48 26 42 39 50 38 47 25 46 30 45 40 18 50 10 41 16 40 28 15 43</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 28 26 38 49 10 27 11 35 47 12 8 45 33 18 8 44 43 21 23 28 48 47 47 24 11</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 17 11 14 14 12 17 17 14 12 11 15 16 15 16 11 17 12 11 13 17 12 12 14 15 15</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 13 16 16 15 14 13 12 15 12 16 14 15 17 11 13 13 14 17 13 14 17 12 14 11 17</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 25 17 21 16 18 24 16 17 18 21 20 22 19 19 19 26 24 17 26 15 24 23 24 20 23</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 17 21 25 24 22 27 15 21 15 26 16 27 26 27 20 17 15 18 17 19 16 20 16 17 19</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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