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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9152</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9153</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -99,43 +99,43 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 <=0.001 0.005 0.0625 <=0.001 <=0.001 2 256 128 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.005 0.002 1 0.002 32 16 64 0.005 0.005 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.025 32 0.5 0.25 0.005 8 256 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.001 0.005 0.0625 0.001 0.001 2 >=256 128 0.005 0.002 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 1 0.002 32 16 64 0.005 0.005 0.025 32 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.25 0.005 8 >=256 0.01 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 36 16 6 43 36 42 50 43 45 25 34 37 9 25 46 39 43 45 47 17 9 22 45 14 47</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 6 43 36 43 50 45 43 25 34 37 9 25 46 39 40 45 47 17 9 22 45 14 47 41</span>
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<span class="r-in"><span><span class="fu">random_sir</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R S R S S S R R I S R S S I S R S R I I R I I R I</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S S S R R I S R S S I S R S R I I R I I R I S S S</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 128 0.125 4 0.01 256 0.25 0.25 1 0.002 0.25 2 0.005</span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 0.001 64 0.001 0.025 0.025 64 128 0.5 16 2 0.001 0.125</span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.125 4 0.01 >=256 0.25 0.25 1 0.002 0.25 2 0.005 0.001</span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 64 0.001 0.025 0.025 64 128 0.5 16 2 0.001 0.125 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 0.025</span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 16 8 2 8 8 1 1 8 16 <=0.5 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 4 4 8 2 16 4 2 8 <=0.5 1 16 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] >=32 16 8 2 8 8 1 1 8 >=32 16 <=0.5</span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 2 >=32 4 >=32 >=32 >=32 4 8 2 16 4 >=32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 2 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 2 1 0.25 0.5 0.5 0.125 0.5 0.25 2 1 0.125</span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 0.25 >=4 0.5 2 1 >=4 0.5 0.125 0.125 2 0.5 0.125</span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 0.125 0.125 0.25 1 1 0.0625 0.5 1 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 4 0.125 0.25 0.25 0.0625 4 0.25 0.125 4 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 4 0.5 0.0625 4 0.125 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 11 30 36 43 35 14 24 8 38 10 10 15 31 49 13 24 43 49 19 47 10 36 15 48 14</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 47 49 10 40 23 16 20 34 45 8 42 10 20 11 30 36 40 35 14 24 8 38 10 10 15</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 13 11 15 17 14 16 17 17 17 11 12 12 12 14 16 15 11 13 11 11 14 14 13 11 17</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 14 12 14 11 13 15 13 11 17 15 14 13 11 15 17 14 16 17 17 17 11 12 12 12 14</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 18 27 15 25 16 21 15 24 23 22 22 15 23 25 23 24 15 15 26 23 27 18 22 24 21</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 27 15 17 23 23 18 18 17 15 18 27 15 25 16 21 15 24 23 22 22 15 23 25 23 24</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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