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(v2.1.1.9225) fix geom_hline()/_vline() in MIC plotting, add EUCAT 1.2 in full, add London contribs, fix mo codes, add Kleb pneu complex

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dr. M.S. (Matthijs) Berends
2025-03-26 17:19:17 +01:00
parent 8deaf2c8eb
commit e6f88241b2
53 changed files with 552 additions and 334 deletions
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data-raw/_pre_commit_checks.R
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@ -448,6 +448,9 @@ pre_commit_lst$AB_TETRACYCLINES_EXCEPT_TGC <- pre_commit_lst$AB_TETRACYCLINES[pr
pre_commit_lst$AB_TRIMETHOPRIMS <- antimicrobials %>%
filter(group %like% "trimethoprim") %>%
pull(ab)
pre_commit_lst$AB_SULFONAMIDES <- antimicrobials %>%
filter(group %like% "trimethoprim" & name %unlike% "trimethoprim") %>%
pull(ab)
pre_commit_lst$AB_UREIDOPENICILLINS <- as.ab(c("PIP", "TZP", "AZL", "MEZ"))
pre_commit_lst$AB_BETALACTAMS <- sort(c(pre_commit_lst$AB_PENICILLINS, pre_commit_lst$AB_CEPHALOSPORINS, pre_commit_lst$AB_CARBAPENEMS, pre_commit_lst$AB_MONOBACTAMS))
pre_commit_lst$AB_BETALACTAMS_WITH_INHIBITOR <- antimicrobials %>%