P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-27 17:47:54 +02:00
Code Releases Activity

Built site for AMR: 2.0.0@68aa98f

Browse Source
This commit is contained in:
github-actions
2023-03-12 15:05:25 +00:00
parent cb279602b6
commit e72c161f5f
29 changed files with 266 additions and 268 deletions
Download Patch File Download Diff File Expand all files Collapse all files

52
articles/MDR.html
View File

@ -385,17 +385,17 @@ names or codes, this would have worked exactly the same way:</p>
<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
<span><span class="co">#&gt; rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
<span><span class="co">#&gt; 1 R R I R R I</span></span>
<span><span class="co">#&gt; 2 S R S S I I</span></span>
<span><span class="co">#&gt; 3 S S I R S S</span></span>
<span><span class="co">#&gt; 4 S I S S R I</span></span>
<span><span class="co">#&gt; 5 R I I S S I</span></span>
<span><span class="co">#&gt; 6 I R R I I I</span></span>
<span><span class="co">#&gt; 1 I R S I S R</span></span>
<span><span class="co">#&gt; 2 R S R S S I</span></span>
<span><span class="co">#&gt; 3 R I I I S S</span></span>
<span><span class="co">#&gt; 4 S I S I R S</span></span>
<span><span class="co">#&gt; 5 R S S I S R</span></span>
<span><span class="co">#&gt; 6 S S S I I S</span></span>
<span><span class="co">#&gt; kanamycin</span></span>
<span><span class="co">#&gt; 1 S</span></span>
<span><span class="co">#&gt; 2 I</span></span>
<span><span class="co">#&gt; 3 I</span></span>
<span><span class="co">#&gt; 4 R</span></span>
<span><span class="co">#&gt; 3 R</span></span>
<span><span class="co">#&gt; 4 S</span></span>
<span><span class="co">#&gt; 5 S</span></span>
<span><span class="co">#&gt; 6 I</span></span></code></pre></div>
<p>We can now add the interpretation of MDR-TB to our data set. You can
@ -438,40 +438,40 @@ Unique: 5</p>
<tr class="odd">
<td align="left">1</td>
<td align="left">Mono-resistant</td>
<td align="right">3189</td>
<td align="right">63.78%</td>
<td align="right">3189</td>
<td align="right">63.78%</td>
<td align="right">3232</td>
<td align="right">64.64%</td>
<td align="right">3232</td>
<td align="right">64.64%</td>
</tr>
<tr class="even">
<td align="left">2</td>
<td align="left">Negative</td>
<td align="right">1007</td>
<td align="right">20.14%</td>
<td align="right">4196</td>
<td align="right">83.92%</td>
<td align="right">952</td>
<td align="right">19.04%</td>
<td align="right">4184</td>
<td align="right">83.68%</td>
</tr>
<tr class="odd">
<td align="left">3</td>
<td align="left">Multi-drug-resistant</td>
<td align="right">464</td>
<td align="right">9.28%</td>
<td align="right">4660</td>
<td align="right">93.20%</td>
<td align="right">465</td>
<td align="right">9.30%</td>
<td align="right">4649</td>
<td align="right">92.98%</td>
</tr>
<tr class="even">
<td align="left">4</td>
<td align="left">Poly-resistant</td>
<td align="right">242</td>
<td align="right">4.84%</td>
<td align="right">4902</td>
<td align="right">98.04%</td>
<td align="right">248</td>
<td align="right">4.96%</td>
<td align="right">4897</td>
<td align="right">97.94%</td>
</tr>
<tr class="odd">
<td align="left">5</td>
<td align="left">Extensively drug-resistant</td>
<td align="right">98</td>
<td align="right">1.96%</td>
<td align="right">103</td>
<td align="right">2.06%</td>
<td align="right">5000</td>
<td align="right">100.00%</td>
</tr>