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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9069</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9071</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -183,43 +183,42 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 0.025 >=256 >=256 4 64 0.25 1 0.01 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.005 0.5 0.0625 <=0.001 >=256 0.0625 4 16 >=256 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 16 <=0.001 32 32 0.005 32 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 128 8 0.5 64 4 0.01 4 0.01 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 2 0.01 >=256 1 0.002 16 <=0.001 128 0.005 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.125 0.25 0.025 >=256 <=0.001 8 4 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 21 47 36 47 30 34 46 18 26 41 27 14 21 44 41 44 24 47 27 46 49 43 21 6 15</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 18 44 14 47 45 38 19 47 40 37 30 49 37 49 22 21 44 44 12 14 9 40 49 32</span>
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<span class="r-in"><span><span class="fu">random_rsi</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'rsi'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R S R R S I R I R R S I R R S R R S S S S I S I R</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] I I R I S I I R R S I I S I I I R I S R S R S R I</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 8 0.125 0.01 2 32 <=0.002 0.5 >=64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 32 8 0.01 16 8 0.5 0.025 0.01 0.0625 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.5 0.005 0.125 32 16 8 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.001 1 0.025 0.5 0.025 4 0.005 8 0.025 0.025 0.01 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 0.001 32 2 0.005 0.001 0.002 32 0.125 16 0.25 128 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 0.025</span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] >=64 4 2 >=64 1 32 8 <=0.5 4 16 8 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] >=64 1 32 32 1 2 1 1 2 16 8 <=0.5</span>
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<span class="r-out co"><span class="r-pr">#></span> [25] <=0.5</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 2 16 4 2 4 4 4 2 16 8 16 4 4 4 8 1 8 2 8 4 4 1 8 4 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.5 2 2 0.5 0.25 8 2 2 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.25 0.25 4 2 2 8 1 8 <=0.125</span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.25 8 8 8 8 4 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.125 1 0.125 2 <=0.0625 1 0.25 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [9] 2 0.5 1 8 4 4 4 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [17] 1 2 2 0.125 1 1 8 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 8 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 30 21 9 8 48 42 24 21 48 40 39 23 25 47 27 33 48 11 28 13 48 48 12 15 19</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 50 49 18 47 37 43 10 44 46 8 45 47 27 21 44 20 49 47 46 42 26 14 30 42 24</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 12 13 16 13 17 11 11 17 16 16 17 13 13 11 17 16 17 14 16 12 11 16 12 17 11</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 14 11 17 11 13 13 13 11 14 13 17 11 14 15 13 15 17 17 17 12 17 13 12 17 16</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 17 27 18 21 19 18 23 20 27 27 16 18 23 26 23 16 22 27 16 22 16 23 24 17 16</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 18 15 18 20 16 18 27 20 21 26 22 17 17 17 27 23 15 19 20 23 27 27 21 15 26</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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