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(v1.2.0.9039) conserve_capped_values for as.rsi()

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dr. M.S. (Matthijs) Berends
2020-07-29 11:46:59 +02:00
parent 453f7f210b
commit e7def0aa4c
14 changed files with 84 additions and 31 deletions
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NEWS.md
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# AMR 1.2.0.9038
# AMR 1.2.0.9039
## <small>Last updated: 29 July 2020</small>
### New
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* Added official antimicrobial names to all `filter_ab_class()` functions, such as `filter_aminoglycosides()`
* Added antibiotics code "FOX1" for cefoxitin screening (abbreviation "cfsc") to the `antibiotics` data set
* Added Monuril as trade name for fosfomycin
* Added parameter `conserve_capped_values` to `as.rsi()` for interpreting MIC values - it makes sure that values starting with "<" (but not "<=") will always return "S" and values starting with ">" (but not ">=") will always return "R". The default behaviour of `as.rsi()` has not changed, so you need to specifically do `as.rsi(..., conserve_capped_values = TRUE)`.
### Changed
* Big speed improvement for using any function on microorganism codes from earlier package versions (prior to `AMR` v1.2.0), such as `as.mo()`, `mo_name()`, `first_isolate()`, `eucast_rules()`, `mdro()`, etc.