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(v1.2.0.9039) conserve_capped_values for as.rsi()

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dr. M.S. (Matthijs) Berends
2020-07-29 11:46:59 +02:00
parent 453f7f210b
commit e7def0aa4c
14 changed files with 84 additions and 31 deletions
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docs/news/index.html
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@ -81,7 +81,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9038</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9039</span>
</span>
</div>
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<small>Source: <a href='https://github.com/msberends/AMR/blob/master/NEWS.md'><code>NEWS.md</code></a></small>
</div>
<div id="amr-1209038" class="section level1">
<h1 class="page-header" data-toc-text="1.2.0.9038">
<a href="#amr-1209038" class="anchor"></a>AMR 1.2.0.9038<small> Unreleased </small>
<div id="amr-1209039" class="section level1">
<h1 class="page-header" data-toc-text="1.2.0.9039">
<a href="#amr-1209039" class="anchor"></a>AMR 1.2.0.9039<small> Unreleased </small>
</h1>
<div id="last-updated-29-july-2020" class="section level2">
<h2 class="hasAnchor">
@ -256,6 +256,7 @@
<li><p>Added official antimicrobial names to all <code><a href="../reference/filter_ab_class.html">filter_ab_class()</a></code> functions, such as <code><a href="../reference/filter_ab_class.html">filter_aminoglycosides()</a></code></p></li>
<li><p>Added antibiotics code “FOX1” for cefoxitin screening (abbreviation “cfsc”) to the <code>antibiotics</code> data set</p></li>
<li><p>Added Monuril as trade name for fosfomycin</p></li>
<li><p>Added parameter <code>conserve_capped_values</code> to <code><a href="../reference/as.rsi.html">as.rsi()</a></code> for interpreting MIC values - it makes sure that values starting with “&lt;” (but not “&lt;=”) will always return “S” and values starting with “&gt;” (but not “&gt;=”) will always return “R”. The default behaviour of <code><a href="../reference/as.rsi.html">as.rsi()</a></code> has not changed, so you need to specifically do <code><a href="../reference/as.rsi.html">as.rsi(..., conserve_capped_values = TRUE)</a></code>.</p></li>
</ul>
</div>
<div id="changed" class="section level3">