diff --git a/DESCRIPTION b/DESCRIPTION index decf80642..f7d905dc6 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: AMR -Version: 3.0.1.9100 -Date: 2026-10-03 +Version: 3.0.1.9101 +Date: 2026-10-04 Title: Antimicrobial Resistance Data Analysis Description: Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial properties by diff --git a/NEWS.md b/NEWS.md index 8082ff342..316e3fa0c 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,4 +1,4 @@ -# AMR 3.0.1.9100 +# AMR 3.0.1.9101 Planned as v3.1.0, mid October 2026. @@ -45,6 +45,7 @@ Planned as v3.1.0, mid October 2026. * A registry of all microbial IDs (MO codes) since v2.0.0 now prevents existing IDs from being reused or mixed up; IDs of earlier releases are translated to the current ID of the same taxon ### Fixed +* EUCAST breakpoint rules for *Aerococcus* (v12 onwards) were never applied, and *Pasteurella* rules were partly filed under *Neisseria meningitidis* (#290) * Streptomycin breakpoints imported from WHONET were coded as streptoduocin (`STR`) instead of streptomycin (`STR1`) * Setting `options(AMR_guideline = "EUCAST 2012")` or any year-qualified value no longer causes errors or silent wrong behaviour in `interpretive_rules()`, `resistance()`, `susceptibility()`, `count_resistant()`, `count_susceptible()`, and SIR plotting/printing functions (#298) * `as.sir()` diff --git a/R/sysdata.rda b/R/sysdata.rda index 04631afe4..d7f98dd45 100755 Binary files a/R/sysdata.rda and b/R/sysdata.rda differ diff --git a/data-raw/interpretive_rules.tsv b/data-raw/interpretive_rules.tsv index f9754f5bd..b1b6ede9e 100644 --- a/data-raw/interpretive_rules.tsv +++ b/data-raw/interpretive_rules.tsv @@ -8,18 +8,18 @@ # >>>>> IF YOU WANT TO IMPORT THIS FILE INTO YOUR OWN SOFTWARE, HAVE THE FIRST 9 LINES SKIPPED <<<<< # ------------------------------------------------------------------------------------------------------------------------------- rule.provider reference.rule_group reference.version reference.rule if_mo_property like.is.one_of this_value and_these_antibiotics have_these_values then_change_these_antibiotics to_value note -EUCAST Breakpoints 10 Aerococcus sanguinicola genus_species is Aerococcus sanguinicola NOR S fluoroquinolones S -EUCAST Breakpoints 10 Aerococcus sanguinicola genus_species is Aerococcus sanguinicola NOR I fluoroquinolones I -EUCAST Breakpoints 10 Aerococcus sanguinicola genus_species is Aerococcus sanguinicola NOR R fluoroquinolones R -EUCAST Breakpoints 10 Aerococcus sanguinicola genus_species is Aerococcus sanguinicola CIP S LVX S -EUCAST Breakpoints 10 Aerococcus sanguinicola genus_species is Aerococcus sanguinicola CIP I LVX I -EUCAST Breakpoints 10 Aerococcus urinae genus_species is Aerococcus sanguinicola CIP R LVX R -EUCAST Breakpoints 10 Aerococcus urinae genus_species is Aerococcus urinae NOR S fluoroquinolones S -EUCAST Breakpoints 10 Aerococcus urinae genus_species is Aerococcus urinae NOR I fluoroquinolones I -EUCAST Breakpoints 10 Aerococcus urinae genus_species is Aerococcus urinae NOR R fluoroquinolones R -EUCAST Breakpoints 10 Aerococcus urinae genus_species is Aerococcus urinae CIP S LVX S -EUCAST Breakpoints 10 Aerococcus urinae genus_species is Aerococcus urinae CIP I LVX I -EUCAST Breakpoints 10 Aerococcus urinae genus_species is Aerococcus urinae CIP R LVX R +EUCAST Breakpoints 10 Aerococcus sanguinicola genus_species one_of Aerococcus sanguinicola NOR S fluoroquinolones S +EUCAST Breakpoints 10 Aerococcus sanguinicola genus_species one_of Aerococcus sanguinicola NOR I fluoroquinolones I +EUCAST Breakpoints 10 Aerococcus sanguinicola genus_species one_of Aerococcus sanguinicola NOR R fluoroquinolones R +EUCAST Breakpoints 10 Aerococcus sanguinicola genus_species one_of Aerococcus sanguinicola CIP S LVX S +EUCAST Breakpoints 10 Aerococcus sanguinicola genus_species one_of Aerococcus sanguinicola CIP I LVX I +EUCAST Breakpoints 10 Aerococcus urinae genus_species one_of Aerococcus sanguinicola CIP R LVX R +EUCAST Breakpoints 10 Aerococcus urinae genus_species one_of Aerococcus urinae NOR S fluoroquinolones S +EUCAST Breakpoints 10 Aerococcus urinae genus_species one_of Aerococcus urinae NOR I fluoroquinolones I +EUCAST Breakpoints 10 Aerococcus urinae genus_species one_of Aerococcus urinae NOR R fluoroquinolones R +EUCAST Breakpoints 10 Aerococcus urinae genus_species one_of Aerococcus urinae CIP S LVX S +EUCAST Breakpoints 10 Aerococcus urinae genus_species one_of Aerococcus urinae CIP I LVX I +EUCAST Breakpoints 10 Aerococcus urinae genus_species one_of Aerococcus urinae CIP R LVX R EUCAST Breakpoints 10 Anaerobic Gram-negatives genus one_of Bacteroides, Bilophila , Fusobacterium, Mobiluncus, Porphyromonas, Prevotella PEN S AMP, AMX, PIP, TZP, TIC S EUCAST Breakpoints 10 Anaerobic Gram-negatives genus one_of Bacteroides, Bilophila , Fusobacterium, Mobiluncus, Porphyromonas, Prevotella PEN I AMP, AMX, PIP, TZP, TIC I EUCAST Breakpoints 10 Anaerobic Gram-negatives genus one_of Bacteroides, Bilophila , Fusobacterium, Mobiluncus, Porphyromonas, Prevotella PEN R AMP, AMX, PIP, TZP, TIC R @@ -76,9 +76,9 @@ EUCAST Breakpoints 10 Moraxella catarrhalis genus_species is Moraxella catarrhal EUCAST Breakpoints 10 Moraxella catarrhalis genus_species is Moraxella catarrhalis ERY I AZM, CLR, RXT I EUCAST Breakpoints 10 Moraxella catarrhalis genus_species is Moraxella catarrhalis ERY R AZM, CLR, RXT R EUCAST Breakpoints 10 Moraxella catarrhalis genus_species is Moraxella catarrhalis TCY S DOX, MNO S -EUCAST Breakpoints 10 Pasteurella multocida genus_species is Pasteurella multocida PEN S AMP, AMX S -EUCAST Breakpoints 10 Pasteurella multocida genus_species is Pasteurella multocida PEN I AMP, AMX I -EUCAST Breakpoints 10 Pasteurella multocida genus_species is Pasteurella multocida PEN R AMP, AMX R +EUCAST Breakpoints 10 Pasteurella genus is Pasteurella PEN S AMP, AMX S +EUCAST Breakpoints 10 Pasteurella genus is Pasteurella PEN I AMP, AMX I +EUCAST Breakpoints 10 Pasteurella genus is Pasteurella PEN R AMP, AMX R EUCAST Breakpoints 10 Staphylococcus genus is Staphylococcus PEN, FOX S betalactams_with_inhibitor S EUCAST Breakpoints 10 Staphylococcus genus is Staphylococcus PEN, FOX R, S OXA, FLC S EUCAST Breakpoints 10 Staphylococcus genus is Staphylococcus FOX R betalactams R @@ -114,18 +114,18 @@ EUCAST Breakpoints 10 Viridans group streptococci genus_species like ^Streptococ EUCAST Breakpoints 10 Viridans group streptococci genus_species like ^Streptococcus (anginosus|australis|bovis|constellatus|cristatus|equinus|gallolyticus|gordonii|infantarius|infantis|intermedius|mitis|mutans|oligofermentans|oralis|parasanguinis|peroris|pseudopneumoniae|salivarius|sanguinis|sinensis|sobrinus|thermophilus|vestibularis|viridans)$ AMP S AMX, AMC, PIP, TZP S EUCAST Breakpoints 10 Viridans group streptococci genus_species like ^Streptococcus (anginosus|australis|bovis|constellatus|cristatus|equinus|gallolyticus|gordonii|infantarius|infantis|intermedius|mitis|mutans|oligofermentans|oralis|parasanguinis|peroris|pseudopneumoniae|salivarius|sanguinis|sinensis|sobrinus|thermophilus|vestibularis|viridans)$ AMP I AMX, AMC, PIP, TZP I EUCAST Breakpoints 10 Viridans group streptococci genus_species like ^Streptococcus (anginosus|australis|bovis|constellatus|cristatus|equinus|gallolyticus|gordonii|infantarius|infantis|intermedius|mitis|mutans|oligofermentans|oralis|parasanguinis|peroris|pseudopneumoniae|salivarius|sanguinis|sinensis|sobrinus|thermophilus|vestibularis|viridans)$ AMP R AMX, AMC, PIP, TZP R -EUCAST Breakpoints 11 Aerococcus sanguinicola genus_species is Aerococcus sanguinicola NOR S fluoroquinolones S -EUCAST Breakpoints 11 Aerococcus sanguinicola genus_species is Aerococcus sanguinicola NOR I fluoroquinolones I -EUCAST Breakpoints 11 Aerococcus sanguinicola genus_species is Aerococcus sanguinicola NOR R fluoroquinolones R -EUCAST Breakpoints 11 Aerococcus sanguinicola genus_species is Aerococcus sanguinicola CIP S LVX S -EUCAST Breakpoints 11 Aerococcus sanguinicola genus_species is Aerococcus sanguinicola CIP I LVX I -EUCAST Breakpoints 11 Aerococcus urinae genus_species is Aerococcus sanguinicola CIP R LVX R -EUCAST Breakpoints 11 Aerococcus urinae genus_species is Aerococcus urinae NOR S fluoroquinolones S -EUCAST Breakpoints 11 Aerococcus urinae genus_species is Aerococcus urinae NOR I fluoroquinolones I -EUCAST Breakpoints 11 Aerococcus urinae genus_species is Aerococcus urinae NOR R fluoroquinolones R -EUCAST Breakpoints 11 Aerococcus urinae genus_species is Aerococcus urinae CIP S LVX S -EUCAST Breakpoints 11 Aerococcus urinae genus_species is Aerococcus urinae CIP I LVX I -EUCAST Breakpoints 11 Aerococcus urinae genus_species is Aerococcus urinae CIP R LVX R +EUCAST Breakpoints 11 Aerococcus sanguinicola genus_species one_of Aerococcus sanguinicola NOR S fluoroquinolones S +EUCAST Breakpoints 11 Aerococcus sanguinicola genus_species one_of Aerococcus sanguinicola NOR I fluoroquinolones I +EUCAST Breakpoints 11 Aerococcus sanguinicola genus_species one_of Aerococcus sanguinicola NOR R fluoroquinolones R +EUCAST Breakpoints 11 Aerococcus sanguinicola genus_species one_of Aerococcus sanguinicola CIP S LVX S +EUCAST Breakpoints 11 Aerococcus sanguinicola genus_species one_of Aerococcus sanguinicola CIP I LVX I +EUCAST Breakpoints 11 Aerococcus urinae genus_species one_of Aerococcus sanguinicola CIP R LVX R +EUCAST Breakpoints 11 Aerococcus urinae genus_species one_of Aerococcus urinae NOR S fluoroquinolones S +EUCAST Breakpoints 11 Aerococcus urinae genus_species one_of Aerococcus urinae NOR I fluoroquinolones I +EUCAST Breakpoints 11 Aerococcus urinae genus_species one_of Aerococcus urinae NOR R fluoroquinolones R +EUCAST Breakpoints 11 Aerococcus urinae genus_species one_of Aerococcus urinae CIP S LVX S +EUCAST Breakpoints 11 Aerococcus urinae genus_species one_of Aerococcus urinae CIP I LVX I +EUCAST Breakpoints 11 Aerococcus urinae genus_species one_of Aerococcus urinae CIP R LVX R EUCAST Breakpoints 11 Anaerobic Gram-negatives genus one_of Bacteroides, Bilophila , Fusobacterium, Mobiluncus, Porphyromonas, Prevotella PEN S AMP, AMX, PIP, TIC S EUCAST Breakpoints 11 Anaerobic Gram-negatives genus one_of Bacteroides, Bilophila , Fusobacterium, Mobiluncus, Porphyromonas, Prevotella PEN I AMP, AMX, PIP, TIC I EUCAST Breakpoints 11 Anaerobic Gram-negatives genus one_of Bacteroides, Bilophila , Fusobacterium, Mobiluncus, Porphyromonas, Prevotella PEN R AMP, AMX, PIP, TIC R @@ -185,9 +185,9 @@ EUCAST Breakpoints 11 Moraxella catarrhalis genus_species is Moraxella catarrhal EUCAST Breakpoints 11 Moraxella catarrhalis genus_species is Moraxella catarrhalis ERY I AZM, CLR, RXT I EUCAST Breakpoints 11 Moraxella catarrhalis genus_species is Moraxella catarrhalis ERY R AZM, CLR, RXT R EUCAST Breakpoints 11 Moraxella catarrhalis genus_species is Moraxella catarrhalis TCY S DOX, MNO S -EUCAST Breakpoints 11 Pasteurella multocida genus_species is Pasteurella multocida PEN S AMP, AMX S -EUCAST Breakpoints 11 Pasteurella multocida genus_species is Pasteurella multocida PEN I AMP, AMX I -EUCAST Breakpoints 11 Pasteurella multocida genus_species is Pasteurella multocida PEN R AMP, AMX R +EUCAST Breakpoints 11 Pasteurella genus is Pasteurella PEN S AMP, AMX S +EUCAST Breakpoints 11 Pasteurella genus is Pasteurella PEN I AMP, AMX I +EUCAST Breakpoints 11 Pasteurella genus is Pasteurella PEN R AMP, AMX R EUCAST Breakpoints 11 Staphylococcus genus is Staphylococcus PEN, FOX S betalactams_with_inhibitor S EUCAST Breakpoints 11 Staphylococcus genus is Staphylococcus PEN, FOX R, S OXA, FLC S EUCAST Breakpoints 11 Staphylococcus genus is Staphylococcus FOX R betalactams R @@ -224,15 +224,15 @@ EUCAST Breakpoints 11 Viridans group streptococci genus_species like ^Streptococ EUCAST Breakpoints 11 Viridans group streptococci genus_species like ^Streptococcus (anginosus|australis|bovis|constellatus|cristatus|equinus|gallolyticus|gordonii|infantarius|infantis|intermedius|mitis|mutans|oligofermentans|oralis|parasanguinis|peroris|pseudopneumoniae|salivarius|sanguinis|sinensis|sobrinus|thermophilus|vestibularis|viridans)$ AMP S AMX, AMC, PIP, TZP S EUCAST Breakpoints 11 Viridans group streptococci genus_species like ^Streptococcus (anginosus|australis|bovis|constellatus|cristatus|equinus|gallolyticus|gordonii|infantarius|infantis|intermedius|mitis|mutans|oligofermentans|oralis|parasanguinis|peroris|pseudopneumoniae|salivarius|sanguinis|sinensis|sobrinus|thermophilus|vestibularis|viridans)$ AMP I AMX, AMC, PIP, TZP I EUCAST Breakpoints 11 Viridans group streptococci genus_species like ^Streptococcus (anginosus|australis|bovis|constellatus|cristatus|equinus|gallolyticus|gordonii|infantarius|infantis|intermedius|mitis|mutans|oligofermentans|oralis|parasanguinis|peroris|pseudopneumoniae|salivarius|sanguinis|sinensis|sobrinus|thermophilus|vestibularis|viridans)$ AMP R AMX, AMC, PIP, TZP R -EUCAST Breakpoints 12 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae AMP S AMX S -EUCAST Breakpoints 12 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae AMP I AMX I -EUCAST Breakpoints 12 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae AMP R AMX R -EUCAST Breakpoints 12 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae CIP S LVX S -EUCAST Breakpoints 12 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae CIP I LVX I -EUCAST Breakpoints 12 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae CIP R LVX R -EUCAST Breakpoints 12 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae NOR-S S fluoroquinolones S -EUCAST Breakpoints 12 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae NOR-S I fluoroquinolones I -EUCAST Breakpoints 12 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae NOR-S R fluoroquinolones R +EUCAST Breakpoints 12 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae AMP S AMX S +EUCAST Breakpoints 12 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae AMP I AMX I +EUCAST Breakpoints 12 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae AMP R AMX R +EUCAST Breakpoints 12 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae CIP S LVX S +EUCAST Breakpoints 12 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae CIP I LVX I +EUCAST Breakpoints 12 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae CIP R LVX R +EUCAST Breakpoints 12 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae NOR-S S fluoroquinolones S +EUCAST Breakpoints 12 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae NOR-S I fluoroquinolones I +EUCAST Breakpoints 12 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae NOR-S R fluoroquinolones R EUCAST Breakpoints 12 Bacillus genus is Bacillus NOR-S S CIP, LVX I EUCAST Breakpoints 12 Bacillus genus is Bacillus NOR-S R CIP, LVX R EUCAST Breakpoints 12 Burkholderia pseudomallei genus_species is Burkholderia pseudomallei TCY-S S DOX I @@ -296,14 +296,14 @@ EUCAST Breakpoints 12 Neisseria gonorrhoeae genus_species is Neisseria gonorrhoe EUCAST Breakpoints 12 Neisseria meningitidis genus_species is Neisseria meningitidis TCY-S S MNO S EUCAST Breakpoints 12 Neisseria meningitidis genus_species is Neisseria meningitidis TCY-S I MNO I EUCAST Breakpoints 12 Neisseria meningitidis genus_species is Neisseria meningitidis TCY-S R MNO R -EUCAST Breakpoints 12 Neisseria meningitidis genus_species is Pasteurella multocida TCY-S S DOX S -EUCAST Breakpoints 12 Neisseria meningitidis genus_species is Pasteurella multocida TCY-S I DOX I -EUCAST Breakpoints 12 Neisseria meningitidis genus_species is Pasteurella multocida TCY-S R DOX R -EUCAST Breakpoints 12 Pasteurella multocida genus_species is Pasteurella multocida PEN S AMP, AMX S -EUCAST Breakpoints 12 Pasteurella multocida genus_species is Pasteurella multocida PEN I AMP, AMX I -EUCAST Breakpoints 12 Pasteurella multocida genus_species is Pasteurella multocida PEN R AMP, AMX R -EUCAST Breakpoints 12 Pasteurella multocida genus_species is Pasteurella multocida NAL-S S CIP, LVX S -EUCAST Breakpoints 12 Pasteurella multocida genus_species is Pasteurella multocida NAL-S R CIP, LVX R +EUCAST Breakpoints 12 Pasteurella genus is Pasteurella TCY-S S DOX S +EUCAST Breakpoints 12 Pasteurella genus is Pasteurella TCY-S I DOX I +EUCAST Breakpoints 12 Pasteurella genus is Pasteurella TCY-S R DOX R +EUCAST Breakpoints 12 Pasteurella genus is Pasteurella PEN S AMP, AMX S +EUCAST Breakpoints 12 Pasteurella genus is Pasteurella PEN I AMP, AMX I +EUCAST Breakpoints 12 Pasteurella genus is Pasteurella PEN R AMP, AMX R +EUCAST Breakpoints 12 Pasteurella genus is Pasteurella NAL-S S CIP, LVX S +EUCAST Breakpoints 12 Pasteurella genus is Pasteurella NAL-S R CIP, LVX R EUCAST Breakpoints 12 Staphylococcus genus_species is Staphylococcus aureus FOX-S R penicillins R See last sentence: Isolates that test resistant to cefoxitin are resistant to all penicillins EUCAST Breakpoints 12 Staphylococcus genus_species is Staphylococcus aureus PEN, FOX-S S, S penicillins S EUCAST Breakpoints 12 Staphylococcus genus_species is Staphylococcus aureus PEN, FOX-S R, S betalactams_with_inhibitor, isoxazolylpenicillins, NAF S @@ -384,15 +384,15 @@ EUCAST Breakpoints 12 Viridans group streptococci genus_species one_of Viridans EUCAST Breakpoints 12 Viridans group streptococci genus_species one_of Viridans Group Streptococcus (VGS) AMP S AMX, AMC, SAM, PIP, TZP S paste("Streptococcus", mo_species(microorganisms.groups$mo[which(microorganisms.groups$mo_group == "B_STRPT_VIRI")]), collapse = ", ") EUCAST Breakpoints 12 Viridans group streptococci genus_species one_of Viridans Group Streptococcus (VGS) AMP I AMX, AMC, SAM, PIP, TZP I paste("Streptococcus", mo_species(microorganisms.groups$mo[which(microorganisms.groups$mo_group == "B_STRPT_VIRI")]), collapse = ", ") EUCAST Breakpoints 12 Viridans group streptococci genus_species one_of Viridans Group Streptococcus (VGS) AMP R AMX, AMC, SAM, PIP, TZP R paste("Streptococcus", mo_species(microorganisms.groups$mo[which(microorganisms.groups$mo_group == "B_STRPT_VIRI")]), collapse = ", ") -EUCAST Breakpoints 14 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae AMP S AMX S -EUCAST Breakpoints 14 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae AMP I AMX I -EUCAST Breakpoints 14 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae AMP R AMX R -EUCAST Breakpoints 14 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae CIP S LVX S -EUCAST Breakpoints 14 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae CIP I LVX I -EUCAST Breakpoints 14 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae CIP R LVX R -EUCAST Breakpoints 14 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae NOR-S S fluoroquinolones S -EUCAST Breakpoints 14 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae NOR-S I fluoroquinolones I -EUCAST Breakpoints 14 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae NOR-S R fluoroquinolones R +EUCAST Breakpoints 14 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae AMP S AMX S +EUCAST Breakpoints 14 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae AMP I AMX I +EUCAST Breakpoints 14 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae AMP R AMX R +EUCAST Breakpoints 14 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae CIP S LVX S +EUCAST Breakpoints 14 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae CIP I LVX I +EUCAST Breakpoints 14 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae CIP R LVX R +EUCAST Breakpoints 14 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae NOR-S S fluoroquinolones S +EUCAST Breakpoints 14 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae NOR-S I fluoroquinolones I +EUCAST Breakpoints 14 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae NOR-S R fluoroquinolones R EUCAST Breakpoints 14 Anaerobic bacteria genus is Prevotella PEN S AMC, AMP, AMX, ETP, IPM, MEM, PEN, SAM, TZP S x <- unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2024" & mo_genus(clinical_breakpoints$mo) == "Prevotella" & clinical_breakpoints$host == "human" & (clinical_breakpoints$site != "Screen" | is.na(clinical_breakpoints$site)))]); x[x %in% betalactams()] |> sort() |> toString() EUCAST Breakpoints 14 Anaerobic bacteria genus is Prevotella AMP S AMX S EUCAST Breakpoints 14 Anaerobic bacteria genus is Prevotella AMP I AMX I @@ -489,14 +489,14 @@ EUCAST Breakpoints 14 Neisseria gonorrhoeae genus_species is Neisseria gonorrhoe EUCAST Breakpoints 14 Neisseria meningitidis genus_species is Neisseria meningitidis TCY-S S MNO S EUCAST Breakpoints 14 Neisseria meningitidis genus_species is Neisseria meningitidis TCY-S I MNO I EUCAST Breakpoints 14 Neisseria meningitidis genus_species is Neisseria meningitidis TCY-S R MNO R -EUCAST Breakpoints 14 Neisseria meningitidis genus_species is Pasteurella multocida TCY-S S DOX S -EUCAST Breakpoints 14 Neisseria meningitidis genus_species is Pasteurella multocida TCY-S I DOX I -EUCAST Breakpoints 14 Neisseria meningitidis genus_species is Pasteurella multocida TCY-S R DOX R -EUCAST Breakpoints 14 Pasteurella multocida genus_species is Pasteurella multocida PEN S AMP, AMX S -EUCAST Breakpoints 14 Pasteurella multocida genus_species is Pasteurella multocida PEN I AMP, AMX I -EUCAST Breakpoints 14 Pasteurella multocida genus_species is Pasteurella multocida PEN R AMP, AMX R -EUCAST Breakpoints 14 Pasteurella multocida genus_species is Pasteurella multocida NAL-S S CIP, LVX S -EUCAST Breakpoints 14 Pasteurella multocida genus_species is Pasteurella multocida NAL-S R CIP, LVX R +EUCAST Breakpoints 14 Pasteurella genus is Pasteurella TCY-S S DOX S +EUCAST Breakpoints 14 Pasteurella genus is Pasteurella TCY-S I DOX I +EUCAST Breakpoints 14 Pasteurella genus is Pasteurella TCY-S R DOX R +EUCAST Breakpoints 14 Pasteurella genus is Pasteurella PEN S AMP, AMX S +EUCAST Breakpoints 14 Pasteurella genus is Pasteurella PEN I AMP, AMX I +EUCAST Breakpoints 14 Pasteurella genus is Pasteurella PEN R AMP, AMX R +EUCAST Breakpoints 14 Pasteurella genus is Pasteurella NAL-S S CIP, LVX S +EUCAST Breakpoints 14 Pasteurella genus is Pasteurella NAL-S R CIP, LVX R EUCAST Breakpoints 14 Staphylococcus genus_species is Staphylococcus aureus FOX-S R penicillins R See last sentence: Isolates that test resistant to cefoxitin are resistant to all penicillins EUCAST Breakpoints 14 Staphylococcus genus_species is Staphylococcus aureus PEN, FOX-S S, S penicillins S EUCAST Breakpoints 14 Staphylococcus genus_species is Staphylococcus aureus PEN, FOX-S R, S betalactams_with_inhibitor, isoxazolylpenicillins, NAF S @@ -578,15 +578,15 @@ EUCAST Breakpoints 14 Viridans group streptococci genus_species one_of Viridans EUCAST Breakpoints 14 Viridans group streptococci genus_species one_of Viridans Group Streptococcus (VGS) AMP S AMX, AMC, SAM, PIP, TZP S will be expanded in eucast_rules() EUCAST Breakpoints 14 Viridans group streptococci genus_species one_of Viridans Group Streptococcus (VGS) AMP I AMX, AMC, SAM, PIP, TZP I will be expanded in eucast_rules() EUCAST Breakpoints 14 Viridans group streptococci genus_species one_of Viridans Group Streptococcus (VGS) AMP R AMX, AMC, SAM, PIP, TZP R will be expanded in eucast_rules() -EUCAST Breakpoints 15 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae AMP S AMX S -EUCAST Breakpoints 15 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae AMP I AMX I -EUCAST Breakpoints 15 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae AMP R AMX R -EUCAST Breakpoints 15 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae CIP S LVX S -EUCAST Breakpoints 15 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae CIP I LVX I -EUCAST Breakpoints 15 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae CIP R LVX R -EUCAST Breakpoints 15 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae NOR-S S fluoroquinolones S -EUCAST Breakpoints 15 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae NOR-S I fluoroquinolones I -EUCAST Breakpoints 15 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae NOR-S R fluoroquinolones R +EUCAST Breakpoints 15 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae AMP S AMX S +EUCAST Breakpoints 15 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae AMP I AMX I +EUCAST Breakpoints 15 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae AMP R AMX R +EUCAST Breakpoints 15 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae CIP S LVX S +EUCAST Breakpoints 15 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae CIP I LVX I +EUCAST Breakpoints 15 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae CIP R LVX R +EUCAST Breakpoints 15 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae NOR-S S fluoroquinolones S +EUCAST Breakpoints 15 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae NOR-S I fluoroquinolones I +EUCAST Breakpoints 15 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae NOR-S R fluoroquinolones R EUCAST Breakpoints 15 Anaerobic bacteria genus is Prevotella PEN S AMC, AMP, AMX, ETP, IPM, MEM, PEN, SAM, TZP S x <- unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2025" & mo_genus(clinical_breakpoints$mo) == "Prevotella" & clinical_breakpoints$host == "human" & (clinical_breakpoints$site != "Screen" | is.na(clinical_breakpoints$site)))]); x[x %in% betalactams()] |> sort() |> toString() EUCAST Breakpoints 15 Anaerobic bacteria genus is Prevotella AMP S AMX S EUCAST Breakpoints 15 Anaerobic bacteria genus is Prevotella AMP I AMX I @@ -683,14 +683,14 @@ EUCAST Breakpoints 15 Neisseria gonorrhoeae genus_species is Neisseria gonorrhoe EUCAST Breakpoints 15 Neisseria meningitidis genus_species is Neisseria meningitidis TCY-S S MNO S EUCAST Breakpoints 15 Neisseria meningitidis genus_species is Neisseria meningitidis TCY-S I MNO I EUCAST Breakpoints 15 Neisseria meningitidis genus_species is Neisseria meningitidis TCY-S R MNO R -EUCAST Breakpoints 15 Neisseria meningitidis genus_species is Pasteurella multocida TCY-S S DOX S -EUCAST Breakpoints 15 Neisseria meningitidis genus_species is Pasteurella multocida TCY-S I DOX I -EUCAST Breakpoints 15 Neisseria meningitidis genus_species is Pasteurella multocida TCY-S R DOX R -EUCAST Breakpoints 15 Pasteurella multocida genus_species is Pasteurella multocida PEN S AMP, AMX S -EUCAST Breakpoints 15 Pasteurella multocida genus_species is Pasteurella multocida PEN I AMP, AMX I -EUCAST Breakpoints 15 Pasteurella multocida genus_species is Pasteurella multocida PEN R AMP, AMX R -EUCAST Breakpoints 15 Pasteurella multocida genus_species is Pasteurella multocida NAL-S S CIP, LVX S -EUCAST Breakpoints 15 Pasteurella multocida genus_species is Pasteurella multocida NAL-S R CIP, LVX R +EUCAST Breakpoints 15 Pasteurella genus is Pasteurella TCY-S S DOX S +EUCAST Breakpoints 15 Pasteurella genus is Pasteurella TCY-S I DOX I +EUCAST Breakpoints 15 Pasteurella genus is Pasteurella TCY-S R DOX R +EUCAST Breakpoints 15 Pasteurella genus is Pasteurella PEN S AMP, AMX S +EUCAST Breakpoints 15 Pasteurella genus is Pasteurella PEN I AMP, AMX I +EUCAST Breakpoints 15 Pasteurella genus is Pasteurella PEN R AMP, AMX R +EUCAST Breakpoints 15 Pasteurella genus is Pasteurella NAL-S S CIP, LVX S +EUCAST Breakpoints 15 Pasteurella genus is Pasteurella NAL-S R CIP, LVX R EUCAST Breakpoints 15 Staphylococcus genus_species is Staphylococcus aureus FOX-S R penicillins R See last sentence: Isolates that test resistant to cefoxitin are resistant to all penicillins EUCAST Breakpoints 15 Staphylococcus genus_species is Staphylococcus aureus PEN, FOX-S S, S penicillins S EUCAST Breakpoints 15 Staphylococcus genus_species is Staphylococcus aureus PEN, FOX-S R, S betalactams_with_inhibitor, isoxazolylpenicillins, NAF S @@ -769,15 +769,15 @@ EUCAST Breakpoints 15 Viridans group streptococci genus_species one_of Viridans EUCAST Breakpoints 15 Viridans group streptococci genus_species one_of Viridans Group Streptococcus (VGS) AMP S AMX, AMC, SAM, PIP, TZP S MO group name will be expanded in eucast_rules() EUCAST Breakpoints 15 Viridans group streptococci genus_species one_of Viridans Group Streptococcus (VGS) AMP I AMX, AMC, SAM, PIP, TZP I MO group name will be expanded in eucast_rules() EUCAST Breakpoints 15 Viridans group streptococci genus_species one_of Viridans Group Streptococcus (VGS) AMP R AMX, AMC, SAM, PIP, TZP R MO group name will be expanded in eucast_rules() -EUCAST Breakpoints 16 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae AMP S AMX S -EUCAST Breakpoints 16 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae AMP I AMX I -EUCAST Breakpoints 16 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae AMP R AMX R -EUCAST Breakpoints 16 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae CIP S LVX S -EUCAST Breakpoints 16 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae CIP I LVX I -EUCAST Breakpoints 16 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae CIP R LVX R -EUCAST Breakpoints 16 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae NOR-S S fluoroquinolones S -EUCAST Breakpoints 16 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae NOR-S I fluoroquinolones I -EUCAST Breakpoints 16 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae NOR-S R fluoroquinolones R +EUCAST Breakpoints 16 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae AMP S AMX S +EUCAST Breakpoints 16 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae AMP I AMX I +EUCAST Breakpoints 16 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae AMP R AMX R +EUCAST Breakpoints 16 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae CIP S LVX S +EUCAST Breakpoints 16 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae CIP I LVX I +EUCAST Breakpoints 16 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae CIP R LVX R +EUCAST Breakpoints 16 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae NOR-S S fluoroquinolones S +EUCAST Breakpoints 16 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae NOR-S I fluoroquinolones I +EUCAST Breakpoints 16 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae NOR-S R fluoroquinolones R EUCAST Breakpoints 16 Anaerobic bacteria genus is Prevotella PEN S AMC, AMP, AMX, ETP, IPM, MEM, PEN, SAM, TZP S x <- unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2026" & mo_genus(clinical_breakpoints$mo) == "Prevotella" & clinical_breakpoints$host == "human" & (clinical_breakpoints$site != "Screen" | is.na(clinical_breakpoints$site)))]); x[x %in% betalactams()] |> sort() |> toString() EUCAST Breakpoints 16 Anaerobic bacteria genus is Prevotella AMP S AMX S EUCAST Breakpoints 16 Anaerobic bacteria genus is Prevotella AMP I AMX I @@ -874,14 +874,14 @@ EUCAST Breakpoints 16 Neisseria gonorrhoeae genus_species is Neisseria gonorrhoe EUCAST Breakpoints 16 Neisseria meningitidis genus_species is Neisseria meningitidis TCY-S S MNO S EUCAST Breakpoints 16 Neisseria meningitidis genus_species is Neisseria meningitidis TCY-S I MNO I EUCAST Breakpoints 16 Neisseria meningitidis genus_species is Neisseria meningitidis TCY-S R MNO R -EUCAST Breakpoints 16 Neisseria meningitidis genus_species is Pasteurella multocida TCY-S S DOX S -EUCAST Breakpoints 16 Neisseria meningitidis genus_species is Pasteurella multocida TCY-S I DOX I -EUCAST Breakpoints 16 Neisseria meningitidis genus_species is Pasteurella multocida TCY-S R DOX R -EUCAST Breakpoints 16 Pasteurella multocida genus_species is Pasteurella multocida PEN S AMP, AMX S -EUCAST Breakpoints 16 Pasteurella multocida genus_species is Pasteurella multocida PEN I AMP, AMX I -EUCAST Breakpoints 16 Pasteurella multocida genus_species is Pasteurella multocida PEN R AMP, AMX R -EUCAST Breakpoints 16 Pasteurella multocida genus_species is Pasteurella multocida NAL-S S CIP, LVX S -EUCAST Breakpoints 16 Pasteurella multocida genus_species is Pasteurella multocida NAL-S R CIP, LVX R +EUCAST Breakpoints 16 Pasteurella genus is Pasteurella TCY-S S DOX S +EUCAST Breakpoints 16 Pasteurella genus is Pasteurella TCY-S I DOX I +EUCAST Breakpoints 16 Pasteurella genus is Pasteurella TCY-S R DOX R +EUCAST Breakpoints 16 Pasteurella genus is Pasteurella PEN S AMP, AMX S +EUCAST Breakpoints 16 Pasteurella genus is Pasteurella PEN I AMP, AMX I +EUCAST Breakpoints 16 Pasteurella genus is Pasteurella PEN R AMP, AMX R +EUCAST Breakpoints 16 Pasteurella genus is Pasteurella NAL-S S CIP, LVX S +EUCAST Breakpoints 16 Pasteurella genus is Pasteurella NAL-S R CIP, LVX R EUCAST Breakpoints 16 Staphylococcus genus_species is Staphylococcus aureus FOX-S R penicillins R See last sentence: Isolates that test resistant to cefoxitin are resistant to all penicillins EUCAST Breakpoints 16 Staphylococcus genus_species is Staphylococcus aureus PEN, FOX-S S, S penicillins S EUCAST Breakpoints 16 Staphylococcus genus_species is Staphylococcus aureus PEN, FOX-S R, S betalactams_with_inhibitor, isoxazolylpenicillins, NAF S @@ -961,15 +961,15 @@ EUCAST Breakpoints 16 Viridans group streptococci genus_species one_of Viridans EUCAST Breakpoints 16 Viridans group streptococci genus_species one_of Viridans Group Streptococcus (VGS) AMP S AMX, AMC, SAM, PIP, TZP S MO group name will be expanded in eucast_rules() EUCAST Breakpoints 16 Viridans group streptococci genus_species one_of Viridans Group Streptococcus (VGS) AMP I AMX, AMC, SAM, PIP, TZP I MO group name will be expanded in eucast_rules() EUCAST Breakpoints 16 Viridans group streptococci genus_species one_of Viridans Group Streptococcus (VGS) AMP R AMX, AMC, SAM, PIP, TZP R MO group name will be expanded in eucast_rules() -EUCAST Breakpoints 13.1 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae AMP S AMX S -EUCAST Breakpoints 13.1 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae AMP I AMX I -EUCAST Breakpoints 13.1 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae AMP R AMX R -EUCAST Breakpoints 13.1 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae CIP S LVX S -EUCAST Breakpoints 13.1 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae CIP I LVX I -EUCAST Breakpoints 13.1 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae CIP R LVX R -EUCAST Breakpoints 13.1 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae NOR-S S fluoroquinolones S -EUCAST Breakpoints 13.1 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae NOR-S I fluoroquinolones I -EUCAST Breakpoints 13.1 Aerococcus sanguinicola/urinae genus_species is Aerococcus sanguinicola, Aerococcus urinae NOR-S R fluoroquinolones R +EUCAST Breakpoints 13.1 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae AMP S AMX S +EUCAST Breakpoints 13.1 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae AMP I AMX I +EUCAST Breakpoints 13.1 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae AMP R AMX R +EUCAST Breakpoints 13.1 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae CIP S LVX S +EUCAST Breakpoints 13.1 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae CIP I LVX I +EUCAST Breakpoints 13.1 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae CIP R LVX R +EUCAST Breakpoints 13.1 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae NOR-S S fluoroquinolones S +EUCAST Breakpoints 13.1 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae NOR-S I fluoroquinolones I +EUCAST Breakpoints 13.1 Aerococcus sanguinicola/urinae genus_species one_of Aerococcus sanguinicola, Aerococcus urinae NOR-S R fluoroquinolones R EUCAST Breakpoints 13.1 Anaerobic bacteria genus is Prevotella PEN S AMC, AMP, AMX, ETP, IPM, MEM, PEN, SAM, TZP S x <- unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2023" & mo_genus(clinical_breakpoints$mo) == "Prevotella" & clinical_breakpoints$host == "human" & (clinical_breakpoints$site != "Screen" | is.na(clinical_breakpoints$site)))]); x[x %in% betalactams()] |> sort() |> toString() EUCAST Breakpoints 13.1 Anaerobic bacteria genus is Prevotella AMP S AMX S EUCAST Breakpoints 13.1 Anaerobic bacteria genus is Prevotella AMP I AMX I @@ -1062,14 +1062,14 @@ EUCAST Breakpoints 13.1 Neisseria gonorrhoeae genus_species is Neisseria gonorrh EUCAST Breakpoints 13.1 Neisseria meningitidis genus_species is Neisseria meningitidis TCY-S S MNO S EUCAST Breakpoints 13.1 Neisseria meningitidis genus_species is Neisseria meningitidis TCY-S I MNO I EUCAST Breakpoints 13.1 Neisseria meningitidis genus_species is Neisseria meningitidis TCY-S R MNO R -EUCAST Breakpoints 13.1 Neisseria meningitidis genus_species is Pasteurella multocida TCY-S S DOX S -EUCAST Breakpoints 13.1 Neisseria meningitidis genus_species is Pasteurella multocida TCY-S I DOX I -EUCAST Breakpoints 13.1 Neisseria meningitidis genus_species is Pasteurella multocida TCY-S R DOX R -EUCAST Breakpoints 13.1 Pasteurella multocida genus_species is Pasteurella multocida PEN S AMP, AMX S -EUCAST Breakpoints 13.1 Pasteurella multocida genus_species is Pasteurella multocida PEN I AMP, AMX I -EUCAST Breakpoints 13.1 Pasteurella multocida genus_species is Pasteurella multocida PEN R AMP, AMX R -EUCAST Breakpoints 13.1 Pasteurella multocida genus_species is Pasteurella multocida NAL-S S CIP, LVX S -EUCAST Breakpoints 13.1 Pasteurella multocida genus_species is Pasteurella multocida NAL-S R CIP, LVX R +EUCAST Breakpoints 13.1 Pasteurella genus is Pasteurella TCY-S S DOX S +EUCAST Breakpoints 13.1 Pasteurella genus is Pasteurella TCY-S I DOX I +EUCAST Breakpoints 13.1 Pasteurella genus is Pasteurella TCY-S R DOX R +EUCAST Breakpoints 13.1 Pasteurella genus is Pasteurella PEN S AMP, AMX S +EUCAST Breakpoints 13.1 Pasteurella genus is Pasteurella PEN I AMP, AMX I +EUCAST Breakpoints 13.1 Pasteurella genus is Pasteurella PEN R AMP, AMX R +EUCAST Breakpoints 13.1 Pasteurella genus is Pasteurella NAL-S S CIP, LVX S +EUCAST Breakpoints 13.1 Pasteurella genus is Pasteurella NAL-S R CIP, LVX R EUCAST Breakpoints 13.1 Staphylococcus genus_species is Staphylococcus aureus FOX-S R penicillins R See last sentence: Isolates that test resistant to cefoxitin are resistant to all penicillins EUCAST Breakpoints 13.1 Staphylococcus genus_species is Staphylococcus aureus PEN, FOX-S S, S penicillins S EUCAST Breakpoints 13.1 Staphylococcus genus_species is Staphylococcus aureus PEN, FOX-S R, S betalactams_with_inhibitor, isoxazolylpenicillins, NAF S