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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9067</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9068</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -183,43 +183,43 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 256 128 1 1 256 1 4 0.025 1 0.125 0.002 256 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 32 0.001 0.001 0.002 16 0.025 0.002 16 8 4 4 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 0.001</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 256 4 128 0.005 32 128 64 256 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 32 0.005 0.025 <=0.001 4 0.005 0.005 64 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.0625 0.01 1 0.01 4 16 2 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 47 47 17 39 50 23 19 41 43 35 22 45 23 45 15 48 22 36 12 33 39 47 8 14 45</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 44 35 48 44 48 6 18 34 9 13 42 45 41 28 24 21 40 41 41 46 44 42 11 39 38</span>
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<span class="r-in"><span><span class="fu">random_rsi</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'rsi'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R S I I S R S S I S R R S S S I R I S S S I I S I</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] I R I S R I S I R I I R R I S I I R R I R S S R R</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.25 0.01 0.005 8 1 128 0.125 32 0.5 0.01 0.005 64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 4 0.125 0.125 8 16 128 8 256 0.001 0.125 128 0.025</span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 0.025 0.5 0.025 0.01 <=0.001 >=64 0.002 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.025 1 2 16 0.01 0.025 >=64 0.0625 >=64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 16 0.0625 0.125 32 >=64 0.0625 8 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 32 4 0.5 4 2 16 1 8 1 0.5 4 0.5 4 32 16 32 0.5 8 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [20] 16 4 1 8 1 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] >=64 2 8 4 8 8 16 2 2 1 2 <=0.5</span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 1 8 4 1 32 2 >=64 1 <=0.5 32 1 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] >=64 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 8 16 16 8 16 8 <=0.0625</span>
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<span class="r-out co"><span class="r-pr">#></span> [9] 1 <=0.0625 0.25 0.25 16 8 1 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [17] 0.125 <=0.0625 1 0.25 16 <=0.0625 2 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.5 1 0.25 0.25 <=0.125 8 4 0.5 <=0.125</span>
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<span class="r-out co"><span class="r-pr">#></span> [10] <=0.125 0.25 0.25 2 0.5 0.5 4 0.25 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 4 <=0.125 <=0.125 1 <=0.125 0.5 0.25 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 46 39 20 40 25 36 19 24 44 49 13 35 23 12 25 18 30 26 48 37 50 35 15 35 42</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 50 28 14 47 14 30 24 47 44 16 45 32 21 40 9 34 29 32 21 26 49 47 40 23 43</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 13 13 14 16 14 12 12 12 13 11 11 17 16 15 13 14 11 11 15 15 13 13 13 13 14</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 13 11 14 12 16 11 13 16 13 17 14 15 12 13 16 11 17 13 15 14 15 15 16 12 15</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 21 16 23 24 22 19 15 24 17 24 16 19 15 17 15 26 15 26 21 22 15 20 20 23 18</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 24 27 25 18 26 24 24 15 15 16 24 20 24 16 17 27 23 20 24 18 24 23 20 26 24</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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