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unknown codes, rsi fix

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dr. M.S. (Matthijs) Berends
2019-03-02 22:47:04 +01:00
parent c5efb272fd
commit e835525cf6
31 changed files with 528 additions and 409 deletions
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R/zzz.R
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@ -55,6 +55,7 @@ make <- function() {
mutate(prevalence = case_when(
class == "Gammaproteobacteria"
| genus %in% c("Enterococcus", "Staphylococcus", "Streptococcus")
| mo == "UNKNOWN"
~ 1,
phylum %in% c("Proteobacteria",
"Firmicutes",