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unknown codes, rsi fix

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dr. M.S. (Matthijs) Berends
2019-03-02 22:47:04 +01:00
parent c5efb272fd
commit e835525cf6
31 changed files with 528 additions and 409 deletions
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2
man/as.mo.Rd
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@ -58,6 +58,8 @@ A microbial ID from this package (class: \code{mo}) typically looks like these e
F (Fungi), P (Protozoa), PL (Plantae) or V (Viruses)
}
Values that cannot be coered will be considered 'unknown' and have an MO code \code{UNKNOWN}.
Use the \code{\link{mo_property}} functions to get properties based on the returned code, see Examples.
\strong{Artificial Intelligence} \cr

3
man/microorganisms.Rd
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@ -4,7 +4,7 @@
\name{microorganisms}
\alias{microorganisms}
\title{Data set with ~60,000 microorganisms}
\format{A \code{\link{data.frame}} with 57,158 observations and 14 variables:
\format{A \code{\link{data.frame}} with 59,985 observations and 15 variables:
\describe{
\item{\code{mo}}{ID of microorganism as used by this package}
\item{\code{col_id}}{Catalogue of Life ID}
@ -20,6 +20,7 @@
\item{\code{rank}}{Taxonomic rank of the microorganism, like \code{"species"} or \code{"genus"}}
\item{\code{ref}}{Author(s) and year of concerning scientific publication}
\item{\code{species_id}}{ID of the species as used by the Catalogue of Life}
\item{\code{prevalence}}{Prevalence of the microorganism, see \code{?as.mo}}
}}
\source{
Catalogue of Life: Annual Checklist (public online database), \url{www.catalogueoflife.org}.

2
man/microorganisms.old.Rd
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@ -4,7 +4,7 @@
\name{microorganisms.old}
\alias{microorganisms.old}
\title{Data set with previously accepted taxonomic names}
\format{A \code{\link{data.frame}} with 14,487 observations and 4 variables:
\format{A \code{\link{data.frame}} with 17,069 observations and 4 variables:
\describe{
\item{\code{col_id}}{Catalogue of Life ID}
\item{\code{tsn_new}}{New Catalogue of Life ID}