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(v1.0.0.9005) info printing only in interactive mode

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dr. M.S. (Matthijs) Berends
2020-02-21 21:13:38 +01:00
parent 47fe8b7820
commit ea32e9916a
28 changed files with 52 additions and 36 deletions
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9
docs/news/index.html
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@ -78,7 +78,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.0.0.9004</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.0.0.9005</span>
</span>
</div>
@ -219,9 +219,9 @@
</div>
<div id="amr-1009004" class="section level1">
<div id="amr-1009005" class="section level1">
<h1 class="page-header">
<a href="#amr-1009004" class="anchor"></a>AMR 1.0.0.9004<small> Unreleased </small>
<a href="#amr-1009005" class="anchor"></a>AMR 1.0.0.9005<small> Unreleased </small>
</h1>
<div id="last-updated-21-feb-2020" class="section level2">
<h2 class="hasAnchor">
@ -242,6 +242,7 @@
</li>
<li><p>Added antibiotic abbreviations for a laboratory manufacturer (GLIMS) for cefuroxime, cefotaxime, ceftazidime, cefepime, cefoxitin and trimethoprim/sulfamethoxazole</p></li>
<li><p>Added <code>uti</code> (as abbreviation of urinary tract infections) as parameter to <code><a href="../reference/as.rsi.html">as.rsi()</a></code>, so interpretation of MIC values and disk zones can be made dependent on isolates specifically from UTIs</p></li>
<li><p>Info printing in functions <code><a href="../reference/eucast_rules.html">eucast_rules()</a></code>, <code><a href="../reference/first_isolate.html">first_isolate()</a></code>, <code><a href="../reference/mdro.html">mdro()</a></code> and <code><a href="../reference/resistance_predict.html">resistance_predict()</a></code> will now at default only print when R is in an interactive mode (i.e. not in RMarkdown)</p></li>
</ul>
</div>
</div>
@ -1473,7 +1474,7 @@
<div id="tocnav">
<h2>Contents</h2>
<ul class="nav nav-pills nav-stacked">
<li><a href="#amr-1009004">1.0.0.9004</a></li>
<li><a href="#amr-1009005">1.0.0.9005</a></li>
<li><a href="#amr-100">1.0.0</a></li>
<li><a href="#amr-090">0.9.0</a></li>
<li><a href="#amr-080">0.8.0</a></li>