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mirror of https://github.com/msberends/AMR.git synced 2025-07-21 10:53:18 +02:00

(v2.1.1.9247) CLSI/EUCAST 2025!

This commit is contained in:
2025-04-20 12:55:31 +02:00
parent 0bab49ff86
commit ea443f7483
65 changed files with 8297 additions and 1901 deletions

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@ -214,8 +214,8 @@ as.mic <- function(x, na.rm = FALSE, keep_operators = "all") {
x <- gsub("=>", ">=", x, fixed = TRUE)
# Remove leading == and =
x <- gsub("^=+", "", x)
# retrieve signs and remove them from input
x_signs <- trimws(gsub("[^>=<]", "", x))
# retrieve operators and remove them from input
x_operators <- trimws(gsub("[^>=<]", "", x))
x <- trimws(gsub("[>=<]", "", x))
# dots without a leading zero must start with 0
x <- gsub("([^0-9]|^)[.]", "\\10.", x, perl = TRUE)
@ -238,8 +238,8 @@ as.mic <- function(x, na.rm = FALSE, keep_operators = "all") {
x <- gsub("[.]$", "", x, perl = TRUE)
# remove scientific notation
x[x %like% "[0-9]e[-]?[0-9]"] <- trimws(format(suppressWarnings(as.double(x[x %like% "[0-9]e[-]?[0-9]"])), scientific = FALSE))
# add signs again
x <- paste0(x_signs, x)
# add operators again
x <- paste0(x_operators, x)
# remove NAs introduced by format()
x <- gsub("(NA)+", "", x)
# trim it