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(v2.1.1.9247) CLSI/EUCAST 2025!
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@ -783,6 +783,193 @@ genus_species is Brucella melitensis TCY-S S DOX S Brucella melitensis Breakpoin
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genus_species is Brucella melitensis TCY-S R DOX R Brucella melitensis Breakpoints 14
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genus_species is Burkholderia pseudomallei TCY-S S DOX I Burkholderia pseudomallei Breakpoints 14
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genus_species is Burkholderia pseudomallei TCY-S R DOX R Burkholderia pseudomallei Breakpoints 14
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order is Enterobacterales AMP S AMX S Enterobacterales (Order) Breakpoints 15
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order is Enterobacterales AMP I AMX I Enterobacterales (Order) Breakpoints 15
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order is Enterobacterales AMP R AMX R Enterobacterales (Order) Breakpoints 15
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order is Enterobacterales LEX S CZO I Enterobacterales (Order) Breakpoints 15
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order is Enterobacterales CFR S CZO I Enterobacterales (Order) Breakpoints 15
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genus is Salmonella PEF-S S CIP S Enterobacterales (Order) Breakpoints 15
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genus is Salmonella PEF-S I CIP I Enterobacterales (Order) Breakpoints 15
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genus is Salmonella PEF-S R CIP R Enterobacterales (Order) Breakpoints 15
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genus_species is Yersinia enterocolitica TCY S DOX S Enterobacterales (Order) Breakpoints 15
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genus_species is Yersinia enterocolitica TCY I DOX I Enterobacterales (Order) Breakpoints 15
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genus_species is Yersinia enterocolitica TCY R DOX R Enterobacterales (Order) Breakpoints 15
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genus_species is Staphylococcus aureus FOX-S R penicillins R Staphylococcus Breakpoints 15 See last sentence: Isolates that test resistant to cefoxitin are resistant to all penicillins
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genus_species is Staphylococcus aureus PEN, FOX-S S, S penicillins S Staphylococcus Breakpoints 15
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genus_species is Staphylococcus aureus PEN, FOX-S R, S betalactams_with_inhibitor, isoxazolylpenicillins, NAF S Staphylococcus Breakpoints 15
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genus is Staphylococcus FOX-S R PEN, PHN, AMP, AMX, PIP, TIC R Staphylococcus Breakpoints 15
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genus_species is Staphylococcus saprophyticus AMP S AMP, SAM, AMX, AMC, PIP, TZP S Staphylococcus Breakpoints 15
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genus is Staphylococcus FOX-S S BPR, CAC, CAT, CCL, CCP, CCV, CCX, CDC, CDR, CEB, CEC, CED, CEM, CEP, CEQ, CFA, CFM, CFM1, CFP, CFR, CFS, CFZ, CHE, CID, CMX, CMZ, CND, CPA, CPC, CPD, CPI, CPL, CPM, CPO, CPR, CPT, CPX, CRD, CRO, CSE, CSL, CSU, CTC, CTF, CTL, CTS, CTT, CTX, CTZ, CXA, CXM, CZD, CZL, CZO, CZP, CZX, DIT, DIX, DIZ, FDC, FEP, FNC, FOV, FOX, FOX-S, FPT, FPZ, HAP, LOR, LTM, MAN, RID, TIO, ZOP S Staphylococcus Breakpoints 15 sort(c(cephalosporins()[!cephalosporins() %in% as.ab(c("cefalexin", "ceftazidim", "ceftazidim/avibactam", "ceftibuten", "ceftolozan/tazobactam"))]))
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genus is Staphylococcus FOX-S I BPR, CAC, CAT, CCL, CCP, CCV, CCX, CDC, CDR, CEB, CEC, CED, CEM, CEP, CEQ, CFA, CFM, CFM1, CFP, CFR, CFS, CFZ, CHE, CID, CMX, CMZ, CND, CPA, CPC, CPD, CPI, CPL, CPM, CPO, CPR, CPT, CPX, CRD, CRO, CSE, CSL, CSU, CTC, CTF, CTL, CTS, CTT, CTX, CTZ, CXA, CXM, CZD, CZL, CZO, CZP, CZX, DIT, DIX, DIZ, FDC, FEP, FNC, FOV, FOX, FOX-S, FPT, FPZ, HAP, LOR, LTM, MAN, RID, TIO, ZOP I Staphylococcus Breakpoints 15 sort(c(cephalosporins()[!cephalosporins() %in% as.ab(c("cefalexin", "ceftazidim", "ceftazidim/avibactam", "ceftibuten", "ceftolozan/tazobactam"))]))
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genus is Staphylococcus FOX-S R BPR, CAC, CAT, CCL, CCP, CCV, CCX, CDC, CDR, CEB, CEC, CED, CEM, CEP, CEQ, CFA, CFM, CFM1, CFP, CFR, CFS, CFZ, CHE, CID, CMX, CMZ, CND, CPA, CPC, CPD, CPI, CPL, CPM, CPO, CPR, CPT, CPX, CRD, CRO, CSE, CSL, CSU, CTC, CTF, CTL, CTS, CTT, CTX, CTZ, CXA, CXM, CZD, CZL, CZO, CZP, CZX, DIT, DIX, DIZ, FDC, FEP, FNC, FOV, FOX, FOX-S, FPT, FPZ, HAP, LOR, LTM, MAN, RID, TIO, ZOP R Staphylococcus Breakpoints 15 sort(c(cephalosporins()[!cephalosporins() %in% as.ab(c("cefalexin", "ceftazidim", "ceftazidim/avibactam", "ceftibuten", "ceftolozan/tazobactam"))]))
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genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S R PEN, PHN, AMP, AMX, PIP, TIC R Staphylococcus Breakpoints 15
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genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S S BPR, CAC, CAT, CCL, CCP, CCV, CCX, CDC, CDR, CEB, CEC, CED, CEM, CEP, CEQ, CFA, CFM, CFM1, CFP, CFR, CFS, CFZ, CHE, CID, CMX, CMZ, CND, CPA, CPC, CPD, CPI, CPL, CPM, CPO, CPR, CPT, CPX, CRD, CRO, CSE, CSL, CSU, CTC, CTF, CTL, CTS, CTT, CTX, CTZ, CXA, CXM, CZD, CZL, CZO, CZP, CZX, DIT, DIX, DIZ, FDC, FEP, FNC, FOV, FOX, FOX-S, FPT, FPZ, HAP, LOR, LTM, MAN, RID, TIO, ZOP S Staphylococcus Breakpoints 15 sort(c(cephalosporins()[!cephalosporins() %in% as.ab(c("cefalexin", "ceftazidim", "ceftazidim/avibactam", "ceftibuten", "ceftolozan/tazobactam"))]))
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genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S I BPR, CAC, CAT, CCL, CCP, CCV, CCX, CDC, CDR, CEB, CEC, CED, CEM, CEP, CEQ, CFA, CFM, CFM1, CFP, CFR, CFS, CFZ, CHE, CID, CMX, CMZ, CND, CPA, CPC, CPD, CPI, CPL, CPM, CPO, CPR, CPT, CPX, CRD, CRO, CSE, CSL, CSU, CTC, CTF, CTL, CTS, CTT, CTX, CTZ, CXA, CXM, CZD, CZL, CZO, CZP, CZX, DIT, DIX, DIZ, FDC, FEP, FNC, FOV, FOX, FOX-S, FPT, FPZ, HAP, LOR, LTM, MAN, RID, TIO, ZOP I Staphylococcus Breakpoints 15 sort(c(cephalosporins()[!cephalosporins() %in% as.ab(c("cefalexin", "ceftazidim", "ceftazidim/avibactam", "ceftibuten", "ceftolozan/tazobactam"))]))
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genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S R BPR, CAC, CAT, CCL, CCP, CCV, CCX, CDC, CDR, CEB, CEC, CED, CEM, CEP, CEQ, CFA, CFM, CFM1, CFP, CFR, CFS, CFZ, CHE, CID, CMX, CMZ, CND, CPA, CPC, CPD, CPI, CPL, CPM, CPO, CPR, CPT, CPX, CRD, CRO, CSE, CSL, CSU, CTC, CTF, CTL, CTS, CTT, CTX, CTZ, CXA, CXM, CZD, CZL, CZO, CZP, CZX, DIT, DIX, DIZ, FDC, FEP, FNC, FOV, FOX, FOX-S, FPT, FPZ, HAP, LOR, LTM, MAN, RID, TIO, ZOP R Staphylococcus Breakpoints 15 sort(c(cephalosporins()[!cephalosporins() %in% as.ab(c("cefalexin", "ceftazidim", "ceftazidim/avibactam", "ceftibuten", "ceftolozan/tazobactam"))]))
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genus_species is Staphylococcus aureus FOX-S S CPT S Staphylococcus Breakpoints 15
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genus_species is Staphylococcus aureus FOX-S S BPR S Staphylococcus Breakpoints 15
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genus is Staphylococcus FOX-S S carbapenems S Staphylococcus Breakpoints 15
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genus is Staphylococcus FOX-S I carbapenems I Staphylococcus Breakpoints 15
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genus is Staphylococcus FOX-S R carbapenems R Staphylococcus Breakpoints 15
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genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S S carbapenems S Staphylococcus Breakpoints 15 Not explicitly mentioned in guidelines in this section, but previous section about these 3 species do mention OXA as preferred method
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genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S I carbapenems I Staphylococcus Breakpoints 15 Not explicitly mentioned in guidelines in this section, but previous section about these 3 species do mention OXA as preferred method
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genus_species one_of Staphylococcus pseudintermedius, Staphylococcus schleiferi, Staphylococcus coagulans OXA-S R carbapenems R Staphylococcus Breakpoints 15 Not explicitly mentioned in guidelines in this section, but previous section about these 3 species do mention OXA as preferred method
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genus is Staphylococcus NOR-S S MFX S Staphylococcus Breakpoints 15
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genus is Staphylococcus NOR-S S CIP, LVX I Staphylococcus Breakpoints 15
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genus is Staphylococcus ERY S AZM, CLR, RXT S Staphylococcus Breakpoints 15
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genus is Staphylococcus TCY-S S DOX, MNO S Staphylococcus Breakpoints 15
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genus is Enterococcus AMP S AMP, SAM, AMX S Enterococcus Breakpoints 15
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genus is Enterococcus AMP I AMP, SAM, AMX I Enterococcus Breakpoints 15
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genus is Enterococcus AMP R AMP, SAM, AMX R Enterococcus Breakpoints 15
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genus is Enterococcus AMP R AMX, AMC R Enterococcus Breakpoints 15
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genus is Enterococcus NOR-S S CIP, LVX S Enterococcus Breakpoints 15
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genus is Enterococcus NOR-S I CIP, LVX I Enterococcus Breakpoints 15
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genus is Enterococcus NOR-S R CIP, LVX R Enterococcus Breakpoints 15
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genus_species one_of Streptococcus Group A, Streptococcus Group C, Streptococcus Group G PEN S penicillins S Streptococcus groups A, B, C, G Breakpoints 15
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genus_species one_of Streptococcus Group A, Streptococcus Group C, Streptococcus Group G PEN I penicillins I Streptococcus groups A, B, C, G Breakpoints 15
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genus_species one_of Streptococcus Group A, Streptococcus Group C, Streptococcus Group G PEN R penicillins R Streptococcus groups A, B, C, G Breakpoints 15
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genus_species is Streptococcus Group B PEN S AMC, AMP, AMX, APL, APX, AXS, AZD, AZL, BAM, BNB, BNP, CIC, CLM, CRB, CRN, EPC, HET, LEN, MEC, MEZ, MSU, MTM, NAF, PEN, PHE, PIP, PIS, PME, PNM, PNO, PRB, PRC, PRP, PSU, PVM, SAM, SBC, SLT6, SRX, TAL, TCC, TEM, TIC, TZP S Streptococcus groups A, B, C, G Breakpoints 15 penicillins()[!penicillins() %in% c("PHN", isoxazolylpenicillins())]
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genus_species is Streptococcus Group B PEN I AMC, AMP, AMX, APL, APX, AXS, AZD, AZL, BAM, BNB, BNP, CIC, CLM, CRB, CRN, EPC, HET, LEN, MEC, MEZ, MSU, MTM, NAF, PEN, PHE, PIP, PIS, PME, PNM, PNO, PRB, PRC, PRP, PSU, PVM, SAM, SBC, SLT6, SRX, TAL, TCC, TEM, TIC, TZP I Streptococcus groups A, B, C, G Breakpoints 15 penicillins()[!penicillins() %in% c("PHN", isoxazolylpenicillins())]
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genus_species is Streptococcus Group B PEN R AMC, AMP, AMX, APL, APX, AXS, AZD, AZL, BAM, BNB, BNP, CIC, CLM, CRB, CRN, EPC, HET, LEN, MEC, MEZ, MSU, MTM, NAF, PEN, PHE, PIP, PIS, PME, PNM, PNO, PRB, PRC, PRP, PSU, PVM, SAM, SBC, SLT6, SRX, TAL, TCC, TEM, TIC, TZP R Streptococcus groups A, B, C, G Breakpoints 15 penicillins()[!penicillins() %in% c("PHN", isoxazolylpenicillins())]
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genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN S cephalosporins S Streptococcus groups A, B, C, G Breakpoints 15
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genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN I cephalosporins I Streptococcus groups A, B, C, G Breakpoints 15
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genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN R cephalosporins R Streptococcus groups A, B, C, G Breakpoints 15
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genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN S carbapenems S Streptococcus groups A, B, C, G Breakpoints 15
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genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN I carbapenems I Streptococcus groups A, B, C, G Breakpoints 15
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genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G PEN R carbapenems R Streptococcus groups A, B, C, G Breakpoints 15
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genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G NOR-S S MFX S Streptococcus groups A, B, C, G Breakpoints 15 does not explicitly state that it is for other fluoroquinolones
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genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G NOR-S S LVX I Streptococcus groups A, B, C, G Breakpoints 15 does not explicitly state that it is for other fluoroquinolones
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genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G NOR-S R MFX, LVX R Streptococcus groups A, B, C, G Breakpoints 15 does not explicitly state that it is for other fluoroquinolones
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genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G VAN S DAL, ORI S Streptococcus groups A, B, C, G Breakpoints 15
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genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G ERY S AZM, CLR, RXT S Streptococcus groups A, B, C, G Breakpoints 15
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genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G ERY R AZM, CLR, RXT R Streptococcus groups A, B, C, G Breakpoints 15
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genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G TCY-S S DOX, MNO S Streptococcus groups A, B, C, G Breakpoints 15
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genus_species one_of Streptococcus Group A, Streptococcus Group B, Streptococcus Group C, Streptococcus Group G TCY-S R DOX, MNO R Streptococcus groups A, B, C, G Breakpoints 15
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genus_species is Streptococcus pneumoniae OXA-S S AMC, AMP, AMX, CPD, CPT, CRO, CTX, CXM, DOR, ETP, FEP, IMR, IPM, MEM, MEV, OXA, PEN, PHN, PIP, SAM, TZP S Streptococcus pneumoniae Breakpoints 15 x <- unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2022" & clinical_breakpoints$mo == as.mo("S. pneumoniae") & clinical_breakpoints$ab != as.ab("cefaclor"))]); sort(c(x[x %in% betalactams()], "SAM", "PIP", "TZP", "PHN", "IMR", "MEV"))
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genus_species is Streptococcus pneumoniae PEN S AMC, AMP, AMX, CPD, CPT, CRO, CTX, CXM, DOR, ETP, FEP, IMR, IPM, MEM, MEV, OXA, PEN, PHN, PIP, SAM, TZP S Streptococcus pneumoniae Breakpoints 15 x <- unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2022" & clinical_breakpoints$mo == as.mo("S. pneumoniae") & clinical_breakpoints$ab != as.ab("cefaclor"))]); sort(c(x[x %in% betalactams()], "SAM", "PIP", "TZP", "PHN", "IMR", "MEV"))
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genus_species is Streptococcus pneumoniae OXA-S S CEC I Streptococcus pneumoniae Breakpoints 15
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genus_species is Streptococcus pneumoniae PEN S CEC I Streptococcus pneumoniae Breakpoints 15
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genus_species is Streptococcus pneumoniae OXA-S R PEN, PHN R Streptococcus pneumoniae Breakpoints 15 from flowchart: when OXA < 20 or PEN > 0.06
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genus_species is Streptococcus pneumoniae PEN R PHN R Streptococcus pneumoniae Breakpoints 15 from flowchart: when OXA < 20 or PEN > 0.06
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genus_species is Streptococcus pneumoniae AMP S AMX, AMC, SAM, PIP, TZP S Streptococcus pneumoniae Breakpoints 15
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genus_species is Streptococcus pneumoniae AMP I AMX, AMC, SAM, PIP, TZP I Streptococcus pneumoniae Breakpoints 15
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genus_species is Streptococcus pneumoniae AMP R AMX, AMC, SAM, PIP, TZP R Streptococcus pneumoniae Breakpoints 15
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genus_species is Streptococcus pneumoniae NOR-S S MFX S Streptococcus pneumoniae Breakpoints 15 does not explicitly state that it is for other fluoroquinolones
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genus_species is Streptococcus pneumoniae NOR-S S LVX I Streptococcus pneumoniae Breakpoints 15 does not explicitly state that it is for other fluoroquinolones
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genus_species is Streptococcus pneumoniae NOR-S R MFX, LVX R Streptococcus pneumoniae Breakpoints 15 does not explicitly state that it is for other fluoroquinolones
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genus_species is Streptococcus pneumoniae ERY S AZM, CLR, RXT S Streptococcus pneumoniae Breakpoints 15
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genus_species is Streptococcus pneumoniae ERY R AZM, CLR, RXT R Streptococcus pneumoniae Breakpoints 15
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genus_species is Streptococcus pneumoniae TCY-S S DOX, MNO S Streptococcus pneumoniae Breakpoints 15
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genus_species is Streptococcus pneumoniae TCY-S R DOX, MNO R Streptococcus pneumoniae Breakpoints 15
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genus_species one_of Viridans Group Streptococcus (VGS) PEN-S S AMC, AMP, AMX, CPD, CPT, CRO, CTX, CXM, DOR, ETP, FEP, IMR, IPM, MEM, MEV, OXA, PEN, PIP, SAM, TZP S Viridans group streptococci Breakpoints 15 MO group name will be expanded in eucast_rules()
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genus_species one_of Viridans Group Streptococcus (VGS) PEN-S R AMC, AMP, AMX, CPD, CPT, CRO, CTX, CXM, DOR, ETP, FEP, IMR, IPM, MEM, MEV, OXA, PEN, PIP, SAM, TZP R Viridans group streptococci Breakpoints 15 MO group name will be expanded in eucast_rules()
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genus_species one_of Viridans Group Streptococcus (VGS) AMP S AMX, AMC, SAM, PIP, TZP S Viridans group streptococci Breakpoints 15 MO group name will be expanded in eucast_rules()
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genus_species one_of Viridans Group Streptococcus (VGS) AMP I AMX, AMC, SAM, PIP, TZP I Viridans group streptococci Breakpoints 15 MO group name will be expanded in eucast_rules()
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genus_species one_of Viridans Group Streptococcus (VGS) AMP R AMX, AMC, SAM, PIP, TZP R Viridans group streptococci Breakpoints 15 MO group name will be expanded in eucast_rules()
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genus_species is Haemophilus influenzae PEN-S S AMC, AMP, AMX, CFM, CPD, CPT, CRO, CTB, CTX, CXM, CZT, DOR, ETP, FEP, IMR, IPM, MEM, MEV, PEN, SAM, TZP S Haemophilus influenzae Breakpoints 15 x <- c(unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2022" & clinical_breakpoints$mo == as.mo("H. influenzae"))]), "IMR", "MEV"); sort(x[x %in% betalactams()])
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genus_species is Haemophilus influenzae PEN-S, BLA-S R, R AMP, AMX, PIP R Haemophilus influenzae Breakpoints 15
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genus_species is Haemophilus influenzae AMC S SAM S Haemophilus influenzae Breakpoints 15
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genus_species is Haemophilus influenzae AMC I SAM I Haemophilus influenzae Breakpoints 15
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genus_species is Haemophilus influenzae AMC R SAM R Haemophilus influenzae Breakpoints 15
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genus_species is Haemophilus influenzae NAL-S S CIP, LVX, MFX, OFX S Haemophilus influenzae Breakpoints 15
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genus_species is Haemophilus influenzae NAL-S R CIP, LVX, MFX, OFX R Haemophilus influenzae Breakpoints 15
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genus_species is Haemophilus influenzae TCY S DOX, MNO S Haemophilus influenzae Breakpoints 15
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genus_species is Haemophilus influenzae TCY R DOX, MNO R Haemophilus influenzae Breakpoints 15
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genus_species is Moraxella catarrhalis BLA-S R AMP, AMX, APL, APX, AZD, AZL, BAM, BNB, BNP, CIC, CLM, CLO, CRB, CRN, DIC, EPC, FLC, HET, LEN, MEC, MET, MEZ, MTM, NAF, OXA, PEN, PHE, PHN, PIP, PME, PNM, PRB, PRC, PRP, PVM, SBC, SLT6, SRX, TAL, TEM, TIC R Moraxella catarrhalis Breakpoints 15 penicillins()[!penicillins() %in% betalactams_with_inhibitor()]
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genus_species is Moraxella catarrhalis AMC S TZP S Moraxella catarrhalis Breakpoints 15
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genus_species is Moraxella catarrhalis AMC I TZP I Moraxella catarrhalis Breakpoints 15
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genus_species is Moraxella catarrhalis AMC R TZP R Moraxella catarrhalis Breakpoints 15
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genus_species is Moraxella catarrhalis NAL-S S CIP, LVX, MFX, OFX S Moraxella catarrhalis Breakpoints 15
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genus_species is Moraxella catarrhalis NAL-S R CIP, LVX, MFX, OFX R Moraxella catarrhalis Breakpoints 15
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genus_species is Moraxella catarrhalis ERY S AZM, CLR, RXT S Moraxella catarrhalis Breakpoints 15
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genus_species is Moraxella catarrhalis ERY R AZM, CLR, RXT R Moraxella catarrhalis Breakpoints 15
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genus_species is Moraxella catarrhalis TCY S DOX, MNO S Moraxella catarrhalis Breakpoints 15
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genus_species is Moraxella catarrhalis TCY R DOX, MNO R Moraxella catarrhalis Breakpoints 15
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genus_species is Neisseria gonorrhoeae BLA-S R AMP, AMX R Neisseria gonorrhoeae Breakpoints 15
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genus_species is Neisseria gonorrhoeae BLA-S, PEN S, S AMP, AMX S Neisseria gonorrhoeae Breakpoints 15
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genus_species is Neisseria gonorrhoeae BLA-S, PEN S, I AMP, AMX I Neisseria gonorrhoeae Breakpoints 15
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genus_species is Neisseria gonorrhoeae BLA-S, PEN S, R AMP, AMX R Neisseria gonorrhoeae Breakpoints 15
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genus_species is Neisseria meningitidis TCY-S S MNO S Neisseria meningitidis Breakpoints 15
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genus_species is Neisseria meningitidis TCY-S I MNO I Neisseria meningitidis Breakpoints 15
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genus_species is Neisseria meningitidis TCY-S R MNO R Neisseria meningitidis Breakpoints 15
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genus is Prevotella PEN S AMC, AMP, AMX, ETP, IPM, MEM, PEN, PIP, SAM, TZP S Anaerobic bacteria Breakpoints 15 x <- c(unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2024" & mo_genus(clinical_breakpoints$mo) == "Prevotella")]), "AMP", "SAM", "AMX", "AMC", "PIP", "ETP", "IPM"); sort(x[x %in% betalactams()])
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genus is Prevotella AMP S AMX S Anaerobic bacteria Breakpoints 15
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genus is Prevotella AMP I AMX I Anaerobic bacteria Breakpoints 15
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genus is Prevotella AMP R AMX R Anaerobic bacteria Breakpoints 15
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genus_species is Fusobacterium necrophorum PEN S AMC, AMP, AMX, ETP, IPM, MEM, PEN, PIP, SAM, TZP S Anaerobic bacteria Breakpoints 15 x <- c(unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2024" & clinical_breakpoints$mo == as.mo("Fusobacterium necrophorum"))]), "AMP", "SAM", "AMX", "AMC", "PIP", "ETP", "IPM"); sort(x[x %in% betalactams()])
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genus_species is Fusobacterium necrophorum AMP S AMX S Anaerobic bacteria Breakpoints 15
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genus_species is Fusobacterium necrophorum AMP I AMX I Anaerobic bacteria Breakpoints 15
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genus_species is Fusobacterium necrophorum AMP R AMX R Anaerobic bacteria Breakpoints 15
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genus_species is Clostridium perfringens PEN S AMC, AMP, AMX, ETP, IPM, MEM, PEN, PIP, SAM, TZP S Anaerobic bacteria Breakpoints 15 x <- c(unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2024" & clinical_breakpoints$mo == as.mo("Fusobacterium necrophorum"))]), "AMP", "SAM", "AMX", "AMC", "PIP", "ETP", "IPM"); sort(x[x %in% betalactams()])
|
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genus_species is Clostridium perfringens AMP S AMX S Anaerobic bacteria Breakpoints 15
|
||||
genus_species is Clostridium perfringens AMP I AMX I Anaerobic bacteria Breakpoints 15
|
||||
genus_species is Clostridium perfringens AMP R AMX R Anaerobic bacteria Breakpoints 15
|
||||
genus_species is Cutibacterium acnes PEN S AMC, AMP, AMX, CRO, CTX, ETP, IPM, MEM, PEN, PIP, SAM, TZP S Anaerobic bacteria Breakpoints 15 x <- c(unique(clinical_breakpoints$ab[which(clinical_breakpoints$guideline == "EUCAST 2024" & clinical_breakpoints$mo == as.mo("Cutibacterium acnes"))]), "AMP", "SAM", "AMX", "AMC", "PIP", "ETP", "IPM", "TZP", "CTX", "CRO"); sort(x[x %in% betalactams()])
|
||||
genus_species is Cutibacterium acnes AMP S AMX S Anaerobic bacteria Breakpoints 15
|
||||
genus_species is Cutibacterium acnes AMP I AMX I Anaerobic bacteria Breakpoints 15
|
||||
genus_species is Cutibacterium acnes AMP R AMX R Anaerobic bacteria Breakpoints 15
|
||||
genus_species is Cutibacterium acnes CTX S CRO S Anaerobic bacteria Breakpoints 15
|
||||
genus_species is Cutibacterium acnes CTX I CRO I Anaerobic bacteria Breakpoints 15
|
||||
genus_species is Cutibacterium acnes CTX R CRO R Anaerobic bacteria Breakpoints 15
|
||||
genus_species is Pasteurella multocida PEN S AMP, AMX S Pasteurella multocida Breakpoints 15
|
||||
genus_species is Pasteurella multocida PEN I AMP, AMX I Pasteurella multocida Breakpoints 15
|
||||
genus_species is Pasteurella multocida PEN R AMP, AMX R Pasteurella multocida Breakpoints 15
|
||||
genus_species is Pasteurella multocida NAL-S S CIP, LVX S Pasteurella multocida Breakpoints 15
|
||||
genus_species is Pasteurella multocida NAL-S R CIP, LVX R Pasteurella multocida Breakpoints 15
|
||||
genus_species is Pasteurella multocida TCY-S S DOX S Neisseria meningitidis Breakpoints 15
|
||||
genus_species is Pasteurella multocida TCY-S I DOX I Neisseria meningitidis Breakpoints 15
|
||||
genus_species is Pasteurella multocida TCY-S R DOX R Neisseria meningitidis Breakpoints 15
|
||||
genus_species one_of Campylobacter coli, Campylobacter jejuni ERY S AZM, CLR S Campylobacter coli/jejuni Breakpoints 15
|
||||
genus_species one_of Campylobacter coli, Campylobacter jejuni ERY I AZM, CLR I Campylobacter coli/jejuni Breakpoints 15
|
||||
genus_species one_of Campylobacter coli, Campylobacter jejuni ERY R AZM, CLR R Campylobacter coli/jejuni Breakpoints 15
|
||||
genus_species one_of Campylobacter coli, Campylobacter jejuni TCY S DOX S Campylobacter coli/jejuni Breakpoints 15
|
||||
genus_species one_of Campylobacter coli, Campylobacter jejuni TCY I DOX I Campylobacter coli/jejuni Breakpoints 15
|
||||
genus_species one_of Campylobacter coli, Campylobacter jejuni TCY R DOX R Campylobacter coli/jejuni Breakpoints 15
|
||||
genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans PEN I AMX S Corynebacterium diphtheriae/ulcerans Breakpoints 15
|
||||
genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans PEN R AMX R Corynebacterium diphtheriae/ulcerans Breakpoints 15
|
||||
genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans PEN I CTX I Corynebacterium diphtheriae/ulcerans Breakpoints 15
|
||||
genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans PEN R CTX R Corynebacterium diphtheriae/ulcerans Breakpoints 15
|
||||
genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans PEN I MEM S Corynebacterium diphtheriae/ulcerans Breakpoints 15
|
||||
genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans PEN R MEM R Corynebacterium diphtheriae/ulcerans Breakpoints 15
|
||||
genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans TCY S DOX S Corynebacterium diphtheriae/ulcerans Breakpoints 15
|
||||
genus_species one_of Corynebacterium diphtheriae, Corynebacterium ulcerans TCY R DOX R Corynebacterium diphtheriae/ulcerans Breakpoints 15
|
||||
genus_species is Aerococcus sanguinicola, Aerococcus urinae AMP S AMX S Aerococcus sanguinicola/urinae Breakpoints 15
|
||||
genus_species is Aerococcus sanguinicola, Aerococcus urinae AMP I AMX I Aerococcus sanguinicola/urinae Breakpoints 15
|
||||
genus_species is Aerococcus sanguinicola, Aerococcus urinae AMP R AMX R Aerococcus sanguinicola/urinae Breakpoints 15
|
||||
genus_species is Aerococcus sanguinicola, Aerococcus urinae CIP S LVX S Aerococcus sanguinicola/urinae Breakpoints 15
|
||||
genus_species is Aerococcus sanguinicola, Aerococcus urinae CIP I LVX I Aerococcus sanguinicola/urinae Breakpoints 15
|
||||
genus_species is Aerococcus sanguinicola, Aerococcus urinae CIP R LVX R Aerococcus sanguinicola/urinae Breakpoints 15
|
||||
genus_species is Aerococcus sanguinicola, Aerococcus urinae NOR-S S fluoroquinolones S Aerococcus sanguinicola/urinae Breakpoints 15
|
||||
genus_species is Aerococcus sanguinicola, Aerococcus urinae NOR-S I fluoroquinolones I Aerococcus sanguinicola/urinae Breakpoints 15
|
||||
genus_species is Aerococcus sanguinicola, Aerococcus urinae NOR-S R fluoroquinolones R Aerococcus sanguinicola/urinae Breakpoints 15
|
||||
genus_species is Kingella kingae BLA-S R PEN, AMP, AMX R Kingella kingae Breakpoints 15
|
||||
genus_species is Kingella kingae PEN S AMP, AMX S Kingella kingae Breakpoints 15
|
||||
genus_species is Kingella kingae PEN I AMP, AMX I Kingella kingae Breakpoints 15
|
||||
genus_species is Kingella kingae PEN R AMP, AMX R Kingella kingae Breakpoints 15
|
||||
genus_species is Kingella kingae ERY S AZM, CLR S Kingella kingae Breakpoints 15
|
||||
genus_species is Kingella kingae ERY I AZM, CLR I Kingella kingae Breakpoints 15
|
||||
genus_species is Kingella kingae ERY R AZM, CLR R Kingella kingae Breakpoints 15
|
||||
genus_species is Kingella kingae TCY S DOX S Kingella kingae Breakpoints 15
|
||||
genus_species is Kingella kingae TCY R DOX R Kingella kingae Breakpoints 15
|
||||
genus is Vibrio PEF-S S CIP, LVX S Vibrio spp. Breakpoints 15
|
||||
genus is Vibrio PEF-S I CIP, LVX I Vibrio spp. Breakpoints 15
|
||||
genus is Vibrio PEF-S R CIP, LVX R Vibrio spp. Breakpoints 15
|
||||
genus is Vibrio ERY S AZM S Vibrio spp. Breakpoints 15
|
||||
genus is Vibrio ERY I AZM I Vibrio spp. Breakpoints 15
|
||||
genus is Vibrio ERY R AZM R Vibrio spp. Breakpoints 15
|
||||
genus is Vibrio TCY-S S DOX S Vibrio spp. Breakpoints 15
|
||||
genus is Vibrio TCY-S I DOX I Vibrio spp. Breakpoints 15
|
||||
genus is Vibrio TCY-S R DOX R Vibrio spp. Breakpoints 15
|
||||
genus is Bacillus NOR-S S CIP, LVX I Bacillus Breakpoints 15
|
||||
genus is Bacillus NOR-S R CIP, LVX R Bacillus Breakpoints 15
|
||||
genus_species is Bacillus anthracis PEN I AMX S Bacillus anthracis Breakpoints 15
|
||||
genus_species is Bacillus anthracis PEN R AMX R Bacillus anthracis Breakpoints 15
|
||||
genus_species is Bacillus anthracis TCY-S S DOX S Bacillus anthracis Breakpoints 15
|
||||
genus_species is Bacillus anthracis TCY-S R DOX R Bacillus anthracis Breakpoints 15
|
||||
genus_species is Brucella melitensis TCY-S S DOX S Brucella melitensis Breakpoints 15
|
||||
genus_species is Brucella melitensis TCY-S R DOX R Brucella melitensis Breakpoints 15
|
||||
genus_species is Burkholderia pseudomallei TCY-S S DOX I Burkholderia pseudomallei Breakpoints 15
|
||||
genus_species is Burkholderia pseudomallei TCY-S R DOX R Burkholderia pseudomallei Breakpoints 15
|
||||
order is Enterobacterales PEN, glycopeptides, lipoglycopeptides, FUS, macrolides, lincosamides, streptogramins, RIF, oxazolidinones R Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp. Expected phenotypes 1.2
|
||||
genus_species one_of Citrobacter koseri, Citrobacter amalonaticus AMP, AMX, TIC R Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp. Expected phenotypes 1.2
|
||||
genus_species is Citrobacter freundii AMP, AMX, AMC, SAM, CZO, CEP, LEX, CFR, FOX R Table 1: Expected resistant phenotype in Enterobacterales and Aeromonas spp. Expected phenotypes 1.2
|
||||
|
||||
|
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|
Reference in New Issue
Block a user