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(v2.1.1.9197) Final fixes for vetmed

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dr. M.S. (Matthijs) Berends
2025-03-13 15:51:58 +01:00
parent 861331b1df
commit eafe9bd113
10 changed files with 7 additions and 8 deletions
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2
R/eucast_rules.R
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@ -642,7 +642,7 @@ eucast_rules <- function(x,
add_fn = font_red
)
}
cols_ab <- c(cols_ab, setNames(unname(cols_ab[names(cols_ab) == ab]), ab_s))
cols_ab <- c(cols_ab, stats::setNames(unname(cols_ab[names(cols_ab) == ab]), ab_s))
}
}

2
R/sir.R
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@ -114,7 +114,7 @@
#' options(AMR_breakpoint_type = "animal")
#' ```
#'
####### TODO When applying veterinary breakpoints (by setting `host` or by setting `breakpoint_type = "animal"`), the [CLSI VET09 guideline](https://clsi.org/standards/products/veterinary-medicine/documents/vet09/) will be applied to cope with missing animal species-specific breakpoints.
###### TODO When applying veterinary breakpoints (by setting `host` or by setting `breakpoint_type = "animal"`), the [CLSI VET09 guideline](https://clsi.org/standards/products/veterinary-medicine/documents/vet09/) will be applied to cope with missing animal species-specific breakpoints.
#'
#' ### After Interpretation
#'