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(v2.1.1.9197) Final fixes for vetmed
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@ -642,7 +642,7 @@ eucast_rules <- function(x,
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add_fn = font_red
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)
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}
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cols_ab <- c(cols_ab, setNames(unname(cols_ab[names(cols_ab) == ab]), ab_s))
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cols_ab <- c(cols_ab, stats::setNames(unname(cols_ab[names(cols_ab) == ab]), ab_s))
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}
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}
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2
R/sir.R
2
R/sir.R
@ -114,7 +114,7 @@
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#' options(AMR_breakpoint_type = "animal")
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#' ```
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#'
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####### TODO When applying veterinary breakpoints (by setting `host` or by setting `breakpoint_type = "animal"`), the [CLSI VET09 guideline](https://clsi.org/standards/products/veterinary-medicine/documents/vet09/) will be applied to cope with missing animal species-specific breakpoints.
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###### TODO When applying veterinary breakpoints (by setting `host` or by setting `breakpoint_type = "animal"`), the [CLSI VET09 guideline](https://clsi.org/standards/products/veterinary-medicine/documents/vet09/) will be applied to cope with missing animal species-specific breakpoints.
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#'
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#' ### After Interpretation
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#'
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