diff --git a/.github/workflows/check.yaml b/.github/workflows/check.yaml
index 2744a96f..a868e7d0 100644
--- a/.github/workflows/check.yaml
+++ b/.github/workflows/check.yaml
@@ -59,6 +59,9 @@ jobs:
- {os: ubuntu-16.04, r: 'devel', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
- {os: ubuntu-16.04, r: 'release', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
- {os: ubuntu-16.04, r: 'oldrel', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
+ - {os: ubuntu-20.04, r: 'devel', allowfail: true, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
+ - {os: ubuntu-20.04, r: 'release', allowfail: true, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
+ - {os: ubuntu-20.04, r: 'oldrel', allowfail: true, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
- {os: ubuntu-16.04, r: '4.0', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
- {os: ubuntu-16.04, r: '3.6', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
- {os: ubuntu-16.04, r: '3.5', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
@@ -66,8 +69,8 @@ jobs:
- {os: ubuntu-16.04, r: '3.3', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
- {os: ubuntu-16.04, r: '3.2', allowfail: true, rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
- {os: ubuntu-16.04, r: '3.1', allowfail: true, rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
- - {os: ubuntu-16.04, r: '3.0', allowfail: true, rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
-
+ - {os: ubuntu-16.04, r: '3.0', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
+ - {os: ubuntu-20.04, r: '3.0', allowfail: true, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
env:
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
RSPM: ${{ matrix.config.rspm }}
@@ -136,8 +139,10 @@ jobs:
env:
_R_CHECK_CRAN_INCOMING_: false
_R_CHECK_FORCE_SUGGESTS_: false
+ _R_CHECK_LENGTH_1_CONDITION_: verbose
+ _R_CHECK_LENGTH_1_LOGIC2_: verbose
run: |
- R CMD check data-raw/AMR_*.tar.gz --no-manual --no-build-vignettes --no-vignettes
+ R CMD check data-raw/AMR_*.tar.gz --no-manual
- name: Show testthat output
if: always()
diff --git a/DESCRIPTION b/DESCRIPTION
index 1d4c4d07..04de6eda 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,6 +1,6 @@
Package: AMR
-Version: 1.4.0.9054
-Date: 2020-12-29
+Version: 1.4.0.9055
+Date: 2020-12-31
Title: Antimicrobial Resistance Analysis
Authors@R: c(
person(role = c("aut", "cre"),
diff --git a/NEWS.md b/NEWS.md
index b571fb49..f6f50ecd 100755
--- a/NEWS.md
+++ b/NEWS.md
@@ -1,5 +1,5 @@
-# AMR 1.4.0.9054
-## Last updated: 29 December 2020
+# AMR 1.4.0.9055
+## Last updated: 31 December 2020
### New
* Functions `get_episode()` and `is_new_episode()` to determine (patient) episodes which are not necessarily based on microorganisms. The `get_episode()` function returns the index number of the episode per group, while the `is_new_episode()` function returns values `TRUE`/`FALSE` to indicate whether an item in a vector is the start of a new episode. They also support `dplyr`s grouping (i.e. using `group_by()`):
diff --git a/data-raw/AMR_1.4.0.9054.tar.gz b/data-raw/AMR_1.4.0.9055.tar.gz
similarity index 87%
rename from data-raw/AMR_1.4.0.9054.tar.gz
rename to data-raw/AMR_1.4.0.9055.tar.gz
index a1ad708a..85ea6f61 100644
Binary files a/data-raw/AMR_1.4.0.9054.tar.gz and b/data-raw/AMR_1.4.0.9055.tar.gz differ
diff --git a/docs/404.html b/docs/404.html
index 4e1fceb7..4e157f9e 100644
--- a/docs/404.html
+++ b/docs/404.html
@@ -81,7 +81,7 @@
NEWS.md
-