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Fix clinical breakpoints

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dr. M.S. (Matthijs) Berends
2023-04-14 23:14:34 +02:00
parent 147f9112e9
commit ed70f95380
30 changed files with 1226 additions and 1616 deletions
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data-raw/microorganisms.txt
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@ -1,5 +1,7 @@
"mo" "fullname" "status" "kingdom" "phylum" "class" "order" "family" "genus" "species" "subspecies" "rank" "ref" "source" "lpsn" "lpsn_parent" "lpsn_renamed_to" "gbif" "gbif_parent" "gbif_renamed_to" "prevalence" "snomed"
"B_ANAER" "(unknown anaerobic bacteria)" "accepted" "Bacteria" "(unknown phylum)" "(unknown class)" "(unknown order)" "(unknown family)" "(unknown Gram-negatives)" "(unknown species)" "(unknown subspecies)" "subspecies" "manually added" 2 ""
"B_ANAER-NEG" "(unknown anaerobic Gram-negatives)" "accepted" "Bacteria" "(unknown phylum)" "(unknown class)" "(unknown order)" "(unknown family)" "(unknown genus)" "(unknown species)" "(unknown subspecies)" "subspecies" "manually added" 2 ""
"B_ANAER-POS" "(unknown anaerobic Gram-positives)" "accepted" "Bacteria" "(unknown phylum)" "(unknown class)" "(unknown order)" "(unknown family)" "(unknown genus)" "(unknown species)" "(unknown subspecies)" "subspecies" "manually added" 2 ""
"F_FUNGUS" "(unknown fungus)" "accepted" "Fungi" "(unknown phylum)" "(unknown class)" "(unknown order)" "(unknown family)" "(unknown genus)" "(unknown species)" "(unknown subspecies)" "subspecies" "manually added" 2 ""
"B_GRAMN" "(unknown Gram-negatives)" "accepted" "Bacteria" "(unknown phylum)" "(unknown class)" "(unknown order)" "(unknown family)" "(unknown Gram-negatives)" "(unknown species)" "(unknown subspecies)" "subspecies" "manually added" 2 ""
"B_GRAMP" "(unknown Gram-positives)" "accepted" "Bacteria" "(unknown phylum)" "(unknown class)" "(unknown order)" "(unknown family)" "(unknown Gram-positives)" "(unknown species)" "(unknown subspecies)" "subspecies" "manually added" 2 ""