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2
reference/AMR-options.html
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@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9092</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9093</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">

2
reference/AMR.html
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@ -21,7 +21,7 @@ The AMR package is available in English, Chinese, Czech, Danish, Dutch, Finnish,
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9092</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9093</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">

17
reference/WHOCC.html
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@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9092</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9093</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -71,10 +71,17 @@
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "Meropenem"</span>
<span class="r-in"><span></span></span>
<span class="r-in"><span><span class="fu"><a href="ab_property.html">ab_tradenames</a></span><span class="op">(</span><span class="st">"flucloxacillin"</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "culpen" "floxacillin" "floxacillin sodium" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [4] "floxapen" "floxapen sodium salt" "fluclox" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [7] "flucloxacilina" "flucloxacillin" "flucloxacilline" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [10] "flucloxacillinum" "fluorochloroxacillin" "staphylex" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "ankerbin" "austrastaph" "bactopen" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [4] "cloxacap" "cloxacillinanhydrous" "cloxacillinhydrate" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [7] "cloxacillinsalt" "cloxapen" "cloxypen" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [10] "culpen" "dariclox" "ekvacillin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [13] "floxacillin" "floxapen" "floxapen sodium salt"</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [16] "fluclox" "flucloxacilina" "flucloxacilline" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [19] "flucloxacillinum" "fluorochloroxacillin" "gelstaph" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [22] "latocillin" "orbenin" "orbeninhydrate" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [25] "prevencilina p" "prostaphilin a" "prostaphlin a" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [28] "staphybiotic" "staphylex" "syntarpensalt" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [31] "tegopen" </span>
</code></pre></div>
</div>
</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>

2
reference/WHONET.html
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@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9092</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9093</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">

2
reference/ab_from_text.html
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@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9092</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9093</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">

167
reference/ab_property.html
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@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9092</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9093</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -177,45 +177,79 @@
<span class="r-in"><span><span class="fu">ab_cid</span><span class="op">(</span><span class="st">"AMX"</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 33613</span>
<span class="r-in"><span><span class="fu">ab_synonyms</span><span class="op">(</span><span class="st">"AMX"</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "actimoxi" "amoclen" "amolin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [4] "amopen" "amopenixin" "amoxibiotic" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [7] "amoxicaps" "amoxicilina" "amoxicillin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [10] "amoxicillin hydrate" "amoxicilline" "amoxicillinum" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [13] "amoxiden" "amoxil" "amoxivet" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [16] "amoxy" "amoxycillin" "amoxyke" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [19] "anemolin" "aspenil" "atoksilin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [22] "biomox" "bristamox" "cemoxin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [25] "clamoxyl" "damoxy" "delacillin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [28] "demoksil" "dispermox" "efpenix" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [31] "flemoxin" "hiconcil" "histocillin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [34] "hydroxyampicillin" "ibiamox" "imacillin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [37] "lamoxy" "largopen" "metafarma capsules" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [40] "metifarma capsules" "moksilin" "moxacin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [43] "moxatag" "ospamox" "pamoxicillin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [46] "piramox" "promoxil" "remoxil" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [49] "robamox" "sawamox pm" "tolodina" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [52] "topramoxin" "unicillin" "utimox" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [55] "vetramox" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "actimoxi" "acuotricina" "agram" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [4] "alfamox" "alfida" "alfoxil enjektabl" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [7] "amitron" "amoclen" "amodex" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [10] "amoksicillin" "amoksicillin forte" "amolin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [13] "amopen" "amopenixin" "amophar" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [16] "amoran" "amoxibiotic" "amoxicaps" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [19] "amoxicilina" "amoxicillin pulsys" "amoxicilline" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [22] "amoxicillinsalt" "amoxicillinum" "amoxidal" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [25] "amoxiden" "amoxil" "amoxil trihydrate" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [28] "amoxillat" "amoxina" "amoxine" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [31] "amoxipen" "amoxivet" "amoxy" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [34] "amoxycillin" "amoxyke" "anemolin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [37] "aspenil" "atoksilin" "biomox" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [40] "bristamox" "cemoxin" "ciblor" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [43] "clamoxyl" "damoxy" "danoxillin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [46] "delacillin" "demoksil" "dispermox" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [49] "dura" "efpenix" "eupen" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [52] "flemoxin" "flemoxine" "galenamox" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [55] "gramidil" "hiconcil" "himinomax" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [58] "histocillin" "hydroxyampicillin" "ibiamox" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [61] "imacillin" "izoltil" "kentrocyllin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [64] "lamoxy" "largopen" "larotid" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [67] "matasedrin" "metafarma capsules" "metifarma" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [70] "metifarma capsules" "moksilin" "moxacin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [73] "moxaline" "moxatag" "neotetranase" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [76] "novabritine" "ospamox" "pacetocin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [79] "pamocil" "pamoxicillin" "paradroxil" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [82] "pasetocin" "penamox" "piramox" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [85] "promoxil" "quimiopen" "remoxil" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [88] "riotapen" "robamox" "sawacillin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [91] "sawamox" "siganopen" "simplamox" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [94] "sintopen" "tolodina" "topramoxin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [97] "trifamox" "trimox" "unicillin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [100] "utimox" "velamox" "vetramox" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [103] "wymox" "zamocillin" "zamocilline" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [106] "zimox" </span>
<span class="r-in"><span><span class="fu">ab_tradenames</span><span class="op">(</span><span class="st">"AMX"</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "actimoxi" "amoclen" "amolin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [4] "amopen" "amopenixin" "amoxibiotic" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [7] "amoxicaps" "amoxicilina" "amoxicillin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [10] "amoxicillin hydrate" "amoxicilline" "amoxicillinum" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [13] "amoxiden" "amoxil" "amoxivet" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [16] "amoxy" "amoxycillin" "amoxyke" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [19] "anemolin" "aspenil" "atoksilin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [22] "biomox" "bristamox" "cemoxin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [25] "clamoxyl" "damoxy" "delacillin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [28] "demoksil" "dispermox" "efpenix" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [31] "flemoxin" "hiconcil" "histocillin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [34] "hydroxyampicillin" "ibiamox" "imacillin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [37] "lamoxy" "largopen" "metafarma capsules" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [40] "metifarma capsules" "moksilin" "moxacin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [43] "moxatag" "ospamox" "pamoxicillin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [46] "piramox" "promoxil" "remoxil" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [49] "robamox" "sawamox pm" "tolodina" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [52] "topramoxin" "unicillin" "utimox" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [55] "vetramox" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "actimoxi" "acuotricina" "agram" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [4] "alfamox" "alfida" "alfoxil enjektabl" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [7] "amitron" "amoclen" "amodex" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [10] "amoksicillin" "amoksicillin forte" "amolin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [13] "amopen" "amopenixin" "amophar" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [16] "amoran" "amoxibiotic" "amoxicaps" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [19] "amoxicilina" "amoxicillin pulsys" "amoxicilline" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [22] "amoxicillinsalt" "amoxicillinum" "amoxidal" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [25] "amoxiden" "amoxil" "amoxil trihydrate" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [28] "amoxillat" "amoxina" "amoxine" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [31] "amoxipen" "amoxivet" "amoxy" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [34] "amoxycillin" "amoxyke" "anemolin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [37] "aspenil" "atoksilin" "biomox" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [40] "bristamox" "cemoxin" "ciblor" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [43] "clamoxyl" "damoxy" "danoxillin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [46] "delacillin" "demoksil" "dispermox" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [49] "dura" "efpenix" "eupen" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [52] "flemoxin" "flemoxine" "galenamox" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [55] "gramidil" "hiconcil" "himinomax" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [58] "histocillin" "hydroxyampicillin" "ibiamox" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [61] "imacillin" "izoltil" "kentrocyllin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [64] "lamoxy" "largopen" "larotid" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [67] "matasedrin" "metafarma capsules" "metifarma" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [70] "metifarma capsules" "moksilin" "moxacin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [73] "moxaline" "moxatag" "neotetranase" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [76] "novabritine" "ospamox" "pacetocin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [79] "pamocil" "pamoxicillin" "paradroxil" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [82] "pasetocin" "penamox" "piramox" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [85] "promoxil" "quimiopen" "remoxil" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [88] "riotapen" "robamox" "sawacillin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [91] "sawamox" "siganopen" "simplamox" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [94] "sintopen" "tolodina" "topramoxin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [97] "trifamox" "trimox" "unicillin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [100] "utimox" "velamox" "vetramox" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [103] "wymox" "zamocillin" "zamocilline" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [106] "zimox" </span>
<span class="r-in"><span><span class="fu">ab_group</span><span class="op">(</span><span class="st">"AMX"</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "Beta-lactams/penicillins"</span>
<span class="r-in"><span><span class="fu">ab_atc_group1</span><span class="op">(</span><span class="st">"AMX"</span><span class="op">)</span></span></span>
@ -265,25 +299,42 @@
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "Penicillins with extended spectrum"</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $tradenames</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "actimoxi" "amoclen" "amolin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [4] "amopen" "amopenixin" "amoxibiotic" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [7] "amoxicaps" "amoxicilina" "amoxicillin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [10] "amoxicillin hydrate" "amoxicilline" "amoxicillinum" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [13] "amoxiden" "amoxil" "amoxivet" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [16] "amoxy" "amoxycillin" "amoxyke" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [19] "anemolin" "aspenil" "atoksilin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [22] "biomox" "bristamox" "cemoxin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [25] "clamoxyl" "damoxy" "delacillin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [28] "demoksil" "dispermox" "efpenix" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [31] "flemoxin" "hiconcil" "histocillin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [34] "hydroxyampicillin" "ibiamox" "imacillin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [37] "lamoxy" "largopen" "metafarma capsules" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [40] "metifarma capsules" "moksilin" "moxacin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [43] "moxatag" "ospamox" "pamoxicillin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [46] "piramox" "promoxil" "remoxil" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [49] "robamox" "sawamox pm" "tolodina" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [52] "topramoxin" "unicillin" "utimox" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [55] "vetramox" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "actimoxi" "acuotricina" "agram" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [4] "alfamox" "alfida" "alfoxil enjektabl" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [7] "amitron" "amoclen" "amodex" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [10] "amoksicillin" "amoksicillin forte" "amolin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [13] "amopen" "amopenixin" "amophar" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [16] "amoran" "amoxibiotic" "amoxicaps" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [19] "amoxicilina" "amoxicillin pulsys" "amoxicilline" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [22] "amoxicillinsalt" "amoxicillinum" "amoxidal" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [25] "amoxiden" "amoxil" "amoxil trihydrate" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [28] "amoxillat" "amoxina" "amoxine" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [31] "amoxipen" "amoxivet" "amoxy" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [34] "amoxycillin" "amoxyke" "anemolin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [37] "aspenil" "atoksilin" "biomox" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [40] "bristamox" "cemoxin" "ciblor" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [43] "clamoxyl" "damoxy" "danoxillin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [46] "delacillin" "demoksil" "dispermox" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [49] "dura" "efpenix" "eupen" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [52] "flemoxin" "flemoxine" "galenamox" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [55] "gramidil" "hiconcil" "himinomax" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [58] "histocillin" "hydroxyampicillin" "ibiamox" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [61] "imacillin" "izoltil" "kentrocyllin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [64] "lamoxy" "largopen" "larotid" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [67] "matasedrin" "metafarma capsules" "metifarma" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [70] "metifarma capsules" "moksilin" "moxacin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [73] "moxaline" "moxatag" "neotetranase" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [76] "novabritine" "ospamox" "pacetocin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [79] "pamocil" "pamoxicillin" "paradroxil" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [82] "pasetocin" "penamox" "piramox" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [85] "promoxil" "quimiopen" "remoxil" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [88] "riotapen" "robamox" "sawacillin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [91] "sawamox" "siganopen" "simplamox" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [94] "sintopen" "tolodina" "topramoxin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [97] "trifamox" "trimox" "unicillin" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [100] "utimox" "velamox" "vetramox" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [103] "wymox" "zamocillin" "zamocilline" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [106] "zimox" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $loinc</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "101498-4" "15-8" "16-6" "16365-9" "17-4" "18-2" </span>

2
reference/add_custom_antimicrobials.html
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@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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2
reference/add_custom_microorganisms.html
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@ -7,7 +7,7 @@
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reference/age.html
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@ -7,7 +7,7 @@
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2
reference/age_groups.html
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@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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2
reference/antibiogram.html
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@ -7,7 +7,7 @@
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2
reference/antibiotic_class_selectors.html
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@ -9,7 +9,7 @@ In short, if you have a column name that resembles an antimicrobial drug, it wil
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2
reference/antibiotics.html
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@ -7,7 +7,7 @@
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4
reference/as.ab.html
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@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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@ -152,7 +152,7 @@
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] ERY</span>
<span class="r-in"><span><span class="fu">as.ab</span><span class="op">(</span><span class="st">"Erythrocin"</span><span class="op">)</span> <span class="co"># trade name</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class 'ab'</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] ERY</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] CLR</span>
<span class="r-in"><span><span class="fu">as.ab</span><span class="op">(</span><span class="st">"Romycin"</span><span class="op">)</span> <span class="co"># trade name</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class 'ab'</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] ERY</span>

2
reference/as.av.html
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@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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2
reference/as.disk.html
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@ -7,7 +7,7 @@
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2
reference/as.mic.html
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@ -7,7 +7,7 @@
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2
reference/as.mo.html
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@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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22
reference/as.sir.html
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@ -21,7 +21,7 @@ All breakpoints used for interpretation are available in our clinical_breakpoint
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@ -785,16 +785,16 @@ A microorganism is categorised as "Resistant" when there is a high likelihood of
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 57 × 16</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> datetime index ab_given mo_given host_given ab mo </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">*</span> <span style="color: #949494; font-style: italic;">&lt;dttm&gt;</span> <span style="color: #949494; font-style: italic;">&lt;int&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;ab&gt;</span> <span style="color: #949494; font-style: italic;">&lt;mo&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 1</span> 2024-10-06 <span style="color: #949494;">14:32:35</span> 4 AMX B_STRPT… human AMX B_STRPT_PNMN </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 2</span> 2024-10-06 <span style="color: #949494;">14:32:42</span> 4 genta Escheri… human GEN B_[ORD]_ENTRBCTR</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 3</span> 2024-10-06 <span style="color: #949494;">14:32:42</span> 4 genta Escheri… human GEN B_[ORD]_ENTRBCTR</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 4</span> 2024-10-06 <span style="color: #949494;">14:32:43</span> 4 genta Escheri… cattle GEN B_ESCHR_COLI </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 5</span> 2024-10-06 <span style="color: #949494;">14:32:43</span> 4 genta Escheri… cattle GEN B_ESCHR_COLI </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 6</span> 2024-10-06 <span style="color: #949494;">14:32:35</span> 3 AMX B_STRPT… human AMX B_STRPT_PNMN </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 7</span> 2024-10-06 <span style="color: #949494;">14:32:42</span> 3 tobra Escheri… human TOB B_[ORD]_ENTRBCTR</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 8</span> 2024-10-06 <span style="color: #949494;">14:32:42</span> 3 tobra Escheri… human TOB B_[ORD]_ENTRBCTR</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 9</span> 2024-10-06 <span style="color: #949494;">14:32:43</span> 3 tobra Escheri… horses TOB B_ESCHR_COLI </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">10</span> 2024-10-06 <span style="color: #949494;">14:32:43</span> 3 tobra Escheri… horses TOB B_ESCHR_COLI </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 1</span> 2024-10-06 <span style="color: #949494;">20:51:09</span> 4 AMX B_STRPT… human AMX B_STRPT_PNMN </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 2</span> 2024-10-06 <span style="color: #949494;">20:51:16</span> 4 genta Escheri… human GEN B_[ORD]_ENTRBCTR</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 3</span> 2024-10-06 <span style="color: #949494;">20:51:16</span> 4 genta Escheri… human GEN B_[ORD]_ENTRBCTR</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 4</span> 2024-10-06 <span style="color: #949494;">20:51:17</span> 4 genta Escheri… cattle GEN B_ESCHR_COLI </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 5</span> 2024-10-06 <span style="color: #949494;">20:51:17</span> 4 genta Escheri… cattle GEN B_ESCHR_COLI </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 6</span> 2024-10-06 <span style="color: #949494;">20:51:09</span> 3 AMX B_STRPT… human AMX B_STRPT_PNMN </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 7</span> 2024-10-06 <span style="color: #949494;">20:51:16</span> 3 tobra Escheri… human TOB B_[ORD]_ENTRBCTR</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 8</span> 2024-10-06 <span style="color: #949494;">20:51:16</span> 3 tobra Escheri… human TOB B_[ORD]_ENTRBCTR</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 9</span> 2024-10-06 <span style="color: #949494;">20:51:17</span> 3 tobra Escheri… horses TOB B_ESCHR_COLI </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">10</span> 2024-10-06 <span style="color: #949494;">20:51:17</span> 3 tobra Escheri… horses TOB B_ESCHR_COLI </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># ℹ 47 more rows</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># ℹ 9 more variables: host &lt;chr&gt;, method &lt;chr&gt;, input &lt;dbl&gt;, outcome &lt;sir&gt;,</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># notes &lt;chr&gt;, guideline &lt;chr&gt;, ref_table &lt;chr&gt;, uti &lt;lgl&gt;,</span></span>

2
reference/atc_online.html
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@ -7,7 +7,7 @@
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reference/av_from_text.html
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@ -7,7 +7,7 @@
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reference/av_property.html
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@ -7,7 +7,7 @@
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reference/availability.html
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@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9092</small>
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2
reference/bug_drug_combinations.html
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@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9092</small>
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reference/clinical_breakpoints.html
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@ -21,7 +21,7 @@ Use as.sir() to transform MICs or disks measurements to SIR values."><meta prope
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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reference/count.html
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@ -9,7 +9,7 @@ count_resistant() should be used to count resistant isolates, count_susceptible(
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reference/custom_eucast_rules.html
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@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9092</small>
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reference/dosage.html
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@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9092</small>
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reference/eucast_rules.html
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@ -9,7 +9,7 @@ To improve the interpretation of the antibiogram before EUCAST rules are applied
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9092</small>
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reference/example_isolates.html
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@ -7,7 +7,7 @@
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reference/example_isolates_unclean.html
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@ -7,7 +7,7 @@
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reference/export_ncbi_biosample.html
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@ -7,7 +7,7 @@
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reference/first_isolate.html
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@ -9,7 +9,7 @@
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reference/g.test.html
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@ -7,7 +7,7 @@
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reference/get_episode.html
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@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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reference/ggplot_pca.html
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@ -7,7 +7,7 @@
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reference/ggplot_sir.html
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@ -7,7 +7,7 @@
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reference/guess_ab_col.html
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@ -7,7 +7,7 @@
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reference/index.html
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@ -7,7 +7,7 @@
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reference/intrinsic_resistant.html
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@ -7,7 +7,7 @@
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reference/italicise_taxonomy.html
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@ -7,7 +7,7 @@
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reference/join.html
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@ -7,7 +7,7 @@
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reference/key_antimicrobials.html
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@ -7,7 +7,7 @@
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reference/kurtosis.html
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@ -7,7 +7,7 @@
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9092</small>
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reference/like.html
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@ -7,7 +7,7 @@
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reference/mdro.html
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@ -7,7 +7,7 @@
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9092</small>
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reference/mean_amr_distance.html
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@ -7,7 +7,7 @@
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reference/microorganisms.codes.html
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@ -7,7 +7,7 @@
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reference/microorganisms.groups.html
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@ -7,7 +7,7 @@
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reference/microorganisms.html
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@ -9,7 +9,7 @@ This data set is carefully crafted, yet made 100% reproducible from public and a
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reference/mo_matching_score.html
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@ -7,7 +7,7 @@
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reference/mo_property.html
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@ -7,7 +7,7 @@
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reference/mo_source.html
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@ -9,7 +9,7 @@ This is the fastest way to have your organisation (or analysis) specific codes p
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reference/pca.html
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@ -7,7 +7,7 @@
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reference/plot.html
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@ -9,7 +9,7 @@ Especially the scale_*_mic() functions are relevant wrappers to plot MIC values
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reference/proportion.html
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@ -9,7 +9,7 @@ resistance() should be used to calculate resistance, susceptibility() should be
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reference/random.html
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@ -7,7 +7,7 @@
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reference/resistance_predict.html
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@ -7,7 +7,7 @@
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reference/skewness.html
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@ -9,7 +9,7 @@ When negative ('left-skewed'): the left tail is longer; the mass of the distribu
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reference/translate.html
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@ -7,7 +7,7 @@
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