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website update

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dr. M.S. (Matthijs) Berends
2022-12-11 11:44:29 +01:00
parent b1ead9c0fe
commit eed1c14b96
28 changed files with 19 additions and 297 deletions
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2
data-raw/_pre_commit_hook.R
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@ -171,7 +171,7 @@ MO_PREVALENT_GENERA <- c(
"Apophysomyces", "Arachnia", "Aspergillus", "Aureobasidium", "Bacteroides", "Basidiobolus",
"Beauveria", "Bergeyella", "Blastocystis", "Blastomyces", "Borrelia", "Brachyspira", "Branhamella",
"Butyricimonas", "Candida", "Capillaria", "Capnocytophaga", "Catabacter", "Cetobacterium", "Chaetomium",
"Chlamydia", "Chlamydophila", "Chryseobacterium", "Chrysonilia", "Cladophialophora", "Cladosporium",
"Chlamydia", "Chlamydophila", "Christensenella", "Chryseobacterium", "Chrysonilia", "Cladophialophora", "Cladosporium",
"Conidiobolus", "Contracaecum", "Cordylobia", "Cryptococcus", "Curvularia", "Deinococcus", "Demodex",
"Dermatobia", "Dientamoeba", "Diphyllobothrium", "Dirofilaria", "Dysgonomonas", "Echinostoma", "Elizabethkingia",
"Empedobacter", "Entamoeba", "Enterobius", "Exophiala", "Exserohilum", "Fasciola", "Flavobacterium", "Fonsecaea",

1
data-raw/reproduction_of_microorganisms.R
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@ -740,7 +740,6 @@ taxonomy <- taxonomy %>%
"Pseudomonadota",
"Actinobacteria", # old, now Actinomycetota
"Actinomycetota"
) |
genus %in% MO_PREVALENT_GENERA)
~ 2,