P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-08 16:42:10 +02:00
Code Releases Activity

doc fix

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2023-02-15 17:16:40 +01:00
parent d4ae174c28
commit ef716f6ee3
6 changed files with 21 additions and 6 deletions
Download Patch File Download Diff File Expand all files Collapse all files

17
index.md
View File

@ -78,7 +78,7 @@ This base R snippet will work in any version of R since April 2013 (R-3.0).
The `AMR` package supports generating traditional, combined, syndromic, and even weighted-incidence syndromic combination antibiograms (WISCA).
If used inside R Markdown or Quarto, the table will be printed in the right output format automatically (such as markdown, LaTeX, HTML, etc.).
If used inside R Markdown or Quarto, the table will be printed in the right output format automatically (such as markdown, LaTeX, HTML, etc.) when using `print()` on an antibiogram object.
```r
antibiogram(example_isolates,
@ -111,6 +111,21 @@ antibiogram(example_isolates,
|Gram-negative (641-693) | 88| 99| 98|
|Gram-positive (345-1044) | 86| 98| 95|
Like many other functions in this package, `antibiograms()` comes with support for 20 languages that are often detected automatically based on system language:
```r
antibiogram(example_isolates,
antibiotics = c("CIP", "TOB", "GEN"),
mo_transform = "gramstain",
ab_transform = "name",
language = "uk") # Ukrainian
```
|Збудник (N min-max) | Гентаміцин| Тобраміцин| Ципрофлоксацин|
|:------------------------|----------:|----------:|--------------:|
|Грамнегативні (684-686) | 96| 96| 91|
|Грампозитивні (665-1170) | 63| 34| 77|
#### Calculating resistance per group