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(v0.7.0.9001) new pathovars, small fixes
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<h1>How to work with WHONET data</h1>
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<h4 class="author">Matthijs S. Berends</h4>
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<h4 class="date">03 June 2019</h4>
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<h4 class="date">07 June 2019</h4>
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<div class="hidden name"><code>WHONET.Rmd</code></div>
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<p>No errors or warnings, so all values are transformed succesfully. Let’s check it though, with a couple of frequency tables:</p>
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<div class="sourceCode" id="cb4"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb4-1" title="1"><span class="co"># our newly created `mo` variable</span></a>
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<a class="sourceLine" id="cb4-2" title="2">data <span class="op">%>%</span><span class="st"> </span><span class="kw"><a href="../reference/freq.html">freq</a></span>(mo, <span class="dt">nmax =</span> <span class="dv">10</span>)</a></code></pre></div>
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<p><strong>Frequency table of <code>mo</code> from a <code>data.frame</code> (500 x 54)</strong></p>
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<p><strong>Frequency table of <code>mo</code> from <code>data</code> (500 x 54)</strong></p>
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<p>Class: mo (character)<br>
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Length: 500 (of which NA: 0 = 0.00%)<br>
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Unique: 39</p>
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@ -342,7 +342,7 @@ Species: 38</p>
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<a class="sourceLine" id="cb5-2" title="2"><span class="co"># our transformed antibiotic columns</span></a>
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<a class="sourceLine" id="cb5-3" title="3"><span class="co"># amoxicillin/clavulanic acid (J01CR02) as an example</span></a>
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<a class="sourceLine" id="cb5-4" title="4">data <span class="op">%>%</span><span class="st"> </span><span class="kw"><a href="../reference/freq.html">freq</a></span>(AMC_ND2)</a></code></pre></div>
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<p><strong>Frequency table of <code>AMC_ND2</code> from a <code>data.frame</code> (500 x 54)</strong></p>
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<p><strong>Frequency table of <code>AMC_ND2</code> from <code>data</code> (500 x 54)</strong></p>
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<p>Class: factor > ordered > rsi (numeric)<br>
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Length: 500 (of which NA: 19 = 3.80%)<br>
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Levels: 3: S < I < R<br>
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