P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-10 09:41:55 +02:00
Code Releases Activity

(v0.7.0.9001) new pathovars, small fixes

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2019-06-07 22:47:37 +02:00
parent 04c75e8e36
commit f02679fb63
83 changed files with 686 additions and 583 deletions
Download Patch File Download Diff File Expand all files Collapse all files

6
docs/articles/WHONET.html
View File

@ -199,7 +199,7 @@
<h1>How to work with WHONET data</h1>
<h4 class="author">Matthijs S. Berends</h4>
<h4 class="date">03 June 2019</h4>
<h4 class="date">07 June 2019</h4>
<div class="hidden name"><code>WHONET.Rmd</code></div>
@ -238,7 +238,7 @@
<p>No errors or warnings, so all values are transformed succesfully. Let’s check it though, with a couple of frequency tables:</p>
<div class="sourceCode" id="cb4"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb4-1" title="1"><span class="co"># our newly created `mo` variable</span></a>
<a class="sourceLine" id="cb4-2" title="2">data <span class="op">%&gt;%</span><span class="st"> </span><span class="kw"><a href="../reference/freq.html">freq</a></span>(mo, <span class="dt">nmax =</span> <span class="dv">10</span>)</a></code></pre></div>
<p><strong>Frequency table of <code>mo</code> from a <code>data.frame</code> (500 x 54)</strong></p>
<p><strong>Frequency table of <code>mo</code> from <code>data</code> (500 x 54)</strong></p>
<p>Class: mo (character)<br>
Length: 500 (of which NA: 0 = 0.00%)<br>
Unique: 39</p>
@ -342,7 +342,7 @@ Species: 38</p>
<a class="sourceLine" id="cb5-2" title="2"><span class="co"># our transformed antibiotic columns</span></a>
<a class="sourceLine" id="cb5-3" title="3"><span class="co"># amoxicillin/clavulanic acid (J01CR02) as an example</span></a>
<a class="sourceLine" id="cb5-4" title="4">data <span class="op">%&gt;%</span><span class="st"> </span><span class="kw"><a href="../reference/freq.html">freq</a></span>(AMC_ND2)</a></code></pre></div>
<p><strong>Frequency table of <code>AMC_ND2</code> from a <code>data.frame</code> (500 x 54)</strong></p>
<p><strong>Frequency table of <code>AMC_ND2</code> from <code>data</code> (500 x 54)</strong></p>
<p>Class: factor &gt; ordered &gt; rsi (numeric)<br>
Length: 500 (of which NA: 19 = 3.80%)<br>
Levels: 3: S &lt; I &lt; R<br>