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(v2.1.1.9131) implement testthat

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dr. M.S. (Matthijs) Berends
2025-01-27 21:43:10 +01:00
parent 92166c16e8
commit f03933940c
63 changed files with 172 additions and 267 deletions
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27
data-raw/_generate_GPT_knowledge_input.sh
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@ -13,9 +13,12 @@ version="$1"
output_file="data-raw/gpt_training_text_v${version}.txt"
# Clear the output file if it exists
echo "This files contains all context you must know about the AMR package for R." > "$output_file"
echo "This knowledge base contains all context you must know about the AMR package for R. You are a GPT trained to be an assistant for the AMR package in R. You are an incredible R specialist, especially trained in this package and in the tidyverse." > "$output_file"
echo "" >> "$output_file"
echo "First and foremost, you are trained on version ${version}. Remember this whenever someone asks which AMR package version you’re at." >> "$output_file"
echo "--------------------------------" >> "$output_file"
echo "" >> "$output_file"
echo "Below are the contents of the `NAMESPACE` file, the `index.md` file, and all the `man/*.Rd` files (documentation) in the package. Every file content is split using 100 hypens." >> "$output_file"
echo "----------------------------------------------------------------------------------------------------" >> "$output_file"
echo "" >> "$output_file"
# Function to remove header block (delimited by # ======)
@ -23,8 +26,9 @@ remove_header() {
sed '/# =\{6,\}/,/# =\{6,\}/d' "$1"
}
# Process all .R files in the 'R' folder
# # Process all .R files in the 'R' folder
# for file in R/*.R; do
# echo "--------------------------------------------------" >> "$output_file"
# echo "THE PART HEREAFTER CONTAINS CONTENTS FROM FILE '$file':" >> "$output_file"
# echo -e "\n" >> "$output_file"
# remove_header "$file" >> "$output_file"
@ -34,6 +38,7 @@ remove_header() {
# Process important metadata files (DESCRIPTION, NAMESPACE, index.md)
for file in NAMESPACE index.md; do
if [[ -f $file ]]; then
echo "----------------------------------------------------------------------------------------------------" >> "$output_file"
echo "THE PART HEREAFTER CONTAINS CONTENTS FROM FILE '$file':" >> "$output_file"
echo -e "\n" >> "$output_file"
cat "$file" >> "$output_file"
@ -43,6 +48,7 @@ done
# Process all .Rd files from the 'man' folder
for file in man/*.Rd; do
echo "----------------------------------------------------------------------------------------------------" >> "$output_file"
echo "THE PART HEREAFTER CONTAINS CONTENTS FROM FILE '$file':" >> "$output_file"
echo -e "\n" >> "$output_file"
remove_header "$file" >> "$output_file"
@ -51,19 +57,20 @@ done
# Process all .Rmd files in the 'vignettes' folder
for file in vignettes/*.Rmd; do
echo "----------------------------------------------------------------------------------------------------" >> "$output_file"
echo "THE PART HEREAFTER CONTAINS CONTENTS FROM FILE '$file':" >> "$output_file"
echo -e "\n" >> "$output_file"
remove_header "$file" >> "$output_file"
echo -e "\n\n" >> "$output_file"
done
# Process all .Rmd files in the 'vignettes' folder
echo "THE PART HEREAFTER CONTAINS THE README OF OUR PYTHON PACKAGE" >> "$output_file"
echo -e "\n" >> "$output_file"
for file in PythonPackage/AMR/README.md; do
remove_header "$file" >> "$output_file"
echo -e "\n\n" >> "$output_file"
done
# Process README.md
# echo "THE PART HEREAFTER CONTAINS THE README OF OUR PYTHON PACKAGE" >> "$output_file"
# echo -e "\n" >> "$output_file"
# for file in PythonPackage/AMR/README.md; do
# remove_header "$file" >> "$output_file"
# echo -e "\n\n" >> "$output_file"
# done
# Process test files (if available) in the 'tests' folder
# for file in tests/*.R; do