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(v2.1.1.9131) implement testthat

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dr. M.S. (Matthijs) Berends
2025-01-27 21:43:10 +01:00
parent 92166c16e8
commit f03933940c
63 changed files with 172 additions and 267 deletions
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tests/testthat/test-disk.R Executable file
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# ==================================================================== #
# TITLE: #
# Antidiskrobial Resistance (AMR) Analysis #
# #
# SOURCE CODE: #
# https://github.com/msberends/AMR #
# #
# PLEASE CITE THIS SOFTWARE AS: #
# Berends MS, Luz CF, Friedrich AW, et al. (2022). #
# AMR: An R Package for Working with Antimicrobial Resistance Data. #
# Journal of Statistical Software, 104(3), 1-31. #
# https://doi.org/10.18637/jss.v104.i03 #
# #
# Developed at the University of Groningen and the University Medical #
# Center Groningen in The Netherlands, in collaboration with many #
# colleagues from around the world, see our website. #
# #
# This R package is free software; you can freely use and distribute #
# it for both personal and commercial purposes under the terms of the #
# GNU General Public License version 2.0 (GNU GPL-2), as published by #
# the Free Software Foundation. #
# We created this package for both routine data analysis and academic #
# research and it was publicly released in the hope that it will be #
# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
# #
# Visit our website for the full manual and a complete tutorial about #
# how to conduct AMR data analysis: https://msberends.github.io/AMR/ #
# ==================================================================== #
expect_true(as.disk(8) == as.disk("8"))
expect_true(is.disk(as.disk(8)))
expect_equal(suppressWarnings(as.logical(as.disk("INVALID VALUE"))), NA)
# all levels should be valid disks
x <- as.disk(c(20, 40))
expect_inherits(x[1], "disk")
expect_inherits(x[[1]], "disk")
expect_inherits(c(x[1], x[9]), "disk")
expect_inherits(unique(x[1], x[9]), "disk")
# expect_warning(as.disk("INVALID VALUE"))
x[2] <- 32
expect_inherits(x, "disk")
pdf(NULL) # prevent Rplots.pdf being created
expect_silent(barplot(as.disk(c(10, 20, 40))))
expect_silent(plot(as.disk(c(10, 20, 40))))
expect_silent(plot(as.disk(c(10, 20, 40)), expand = FALSE))
expect_silent(plot(as.disk(c(10, 20, 40)), mo = "Escherichia coli", ab = "cipr"))
if (AMR:::pkg_is_available("ggplot2")) {
expect_inherits(ggplot2::autoplot(as.disk(c(10, 20, 40))), "gg")
expect_inherits(ggplot2::autoplot(as.disk(c(10, 20, 40)), expand = FALSE), "gg")
expect_inherits(ggplot2::autoplot(as.disk(c(10, 20, 40)), mo = "Escherichia coli", ab = "cipr"), "gg")
}
expect_stdout(print(as.disk(12)))
if (AMR:::pkg_is_available("tibble")) {
expect_stdout(print(tibble::tibble(d = as.disk(12))))
}