(v2.1.1.9131) implement testthat

2025-07-10 22:22:19 +02:00 · 2025-01-27 21:43:10 +01:00
parent 92166c16e8
commit f03933940c
63 changed files with 172 additions and 267 deletions
--- a/tests/tinytest.R.old
+++ b/tests/tinytest.R.old
@ -0,0 +1,82 @@
+# ==================================================================== #
+# TITLE:                                                               #
+# AMR: An R Package for Working with Antimicrobial Resistance Data     #
+#                                                                      #
+# SOURCE CODE:                                                         #
+# https://github.com/msberends/AMR                                     #
+#                                                                      #
+# PLEASE CITE THIS SOFTWARE AS:                                        #
+# Berends MS, Luz CF, Friedrich AW, et al. (2022).                     #
+# AMR: An R Package for Working with Antimicrobial Resistance Data.    #
+# Journal of Statistical Software, 104(3), 1-31.                       #
+# https://doi.org/10.18637/jss.v104.i03                                #
+#                                                                      #
+# Developed at the University of Groningen and the University Medical  #
+# Center Groningen in The Netherlands, in collaboration with many      #
+# colleagues from around the world, see our website.                   #
+#                                                                      #
+# This R package is free software; you can freely use and distribute   #
+# it for both personal and commercial purposes under the terms of the  #
+# GNU General Public License version 2.0 (GNU GPL-2), as published by  #
+# the Free Software Foundation.                                        #
+# We created this package for both routine data analysis and academic  #
+# research and it was publicly released in the hope that it will be    #
+# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY.              #
+#                                                                      #
+# Visit our website for the full manual and a complete tutorial about  #
+# how to conduct AMR data analysis: https://msberends.github.io/AMR/   #
+# ==================================================================== #
+
+# we use {tinytest} for older R versions to allow unit testing in R >= 3.0.0.
+
+# test only on GitHub Actions - not on CRAN as tests are lengthy
+if (identical(Sys.getenv("R_RUN_TINYTEST"), "true")) {
+  # env var 'R_LIBS_USER' gets overwritten during 'R CMD check' in GitHub Actions, so:
+  .libPaths(c(Sys.getenv("R_LIBS_USER_GH_ACTIONS"), .libPaths()))
+  
+  if (AMR:::pkg_is_available("tinytest", also_load = TRUE)) {
+    
+    # load the package
+    library(AMR)
+    
+    # set language
+    set_AMR_locale("English")
+    
+    # set some functions for older R versions
+    if (getRversion() < "3.2.0") {
+      anyNA <- AMR:::anyNA
+      dir.exists <- AMR:::dir.exists
+      file.size <- AMR:::file.size
+      file.mtime <- AMR:::file.mtime
+      isNamespaceLoaded <- AMR:::isNamespaceLoaded
+      lengths <- AMR:::lengths
+    }
+    if (getRversion() < "3.3.0") {
+      strrep <- AMR:::strrep
+    }
+    if (getRversion() < "3.5.0") {
+      isFALSE <- AMR:::isFALSE
+    }
+    if (getRversion() < "3.6.0") {
+      str2lang <- AMR:::str2lang
+      # trims() was introduced in 3.3.0, but its argument `whitespace` only in 3.6.0
+      trimws <- AMR:::trimws
+    }
+    if (getRversion() < "4.0.0") {
+      deparse1 <- AMR:::deparse1
+    }
+    
+    suppressMessages(
+      out <- test_package("AMR",
+                          testdir = ifelse(dir.exists("inst/testthat"),
+                                           "inst/testthat",
+                                           "testthat"
+                          ),
+                          verbose = FALSE,
+                          color = FALSE
+      )
+    )
+    cat("\n\nSUMMARY:\n")
+    print(summary(out))
+  }
+}