mirror of
https://github.com/msberends/AMR.git
synced 2024-12-25 17:26:12 +01:00
(v1.7.1.9029) unit test fix
This commit is contained in:
parent
e4de7f5055
commit
f0a4d29fe0
@ -1,6 +1,6 @@
|
|||||||
Package: AMR
|
Package: AMR
|
||||||
Version: 1.7.1.9028
|
Version: 1.7.1.9029
|
||||||
Date: 2021-08-20
|
Date: 2021-08-21
|
||||||
Title: Antimicrobial Resistance Data Analysis
|
Title: Antimicrobial Resistance Data Analysis
|
||||||
Description: Functions to simplify and standardise antimicrobial resistance (AMR)
|
Description: Functions to simplify and standardise antimicrobial resistance (AMR)
|
||||||
data analysis and to work with microbial and antimicrobial properties by
|
data analysis and to work with microbial and antimicrobial properties by
|
||||||
|
4
NEWS.md
4
NEWS.md
@ -1,5 +1,5 @@
|
|||||||
# `AMR` 1.7.1.9028
|
# `AMR` 1.7.1.9029
|
||||||
## <small>Last updated: 20 August 2021</small>
|
## <small>Last updated: 21 August 2021</small>
|
||||||
|
|
||||||
### Breaking changes
|
### Breaking changes
|
||||||
* Removed `p_symbol()` and all `filter_*()` functions (except for `filter_first_isolate()`), which were all deprecated in a previous package version
|
* Removed `p_symbol()` and all `filter_*()` functions (except for `filter_first_isolate()`), which were all deprecated in a previous package version
|
||||||
|
Binary file not shown.
@ -39,7 +39,11 @@ if (length(to_install) == 0) {
|
|||||||
}
|
}
|
||||||
for (i in seq_len(length(to_install))) {
|
for (i in seq_len(length(to_install))) {
|
||||||
cat("Installing package", to_install[i], "\n")
|
cat("Installing package", to_install[i], "\n")
|
||||||
tryCatch(install.packages(to_install[i], repos = "https://cran.rstudio.com/", dependencies = c("Depends", "Imports"), quiet = FALSE),
|
tryCatch(install.packages(to_install[i],
|
||||||
|
type = ifelse(.Platform$OS.type == "unix", "source", "binary"),
|
||||||
|
repos = "https://cran.rstudio.com/",
|
||||||
|
dependencies = c("Depends", "Imports"),
|
||||||
|
quiet = FALSE),
|
||||||
# message = function(m) invisible(),
|
# message = function(m) invisible(),
|
||||||
warning = function(w) message(w$message),
|
warning = function(w) message(w$message),
|
||||||
error = function(e) message(e$message))
|
error = function(e) message(e$message))
|
||||||
@ -51,9 +55,10 @@ if (length(to_update) == 0) {
|
|||||||
message("\nNothing to update\n")
|
message("\nNothing to update\n")
|
||||||
}
|
}
|
||||||
for (i in seq_len(length(to_update))) {
|
for (i in seq_len(length(to_update))) {
|
||||||
cat("Updating package", to_update[i], "\n")
|
cat("Updating package '", to_update[i], "' v", as.character(packageVersion(to_update[i])), "\n", sep = "")
|
||||||
tryCatch(update.packages(to_update[i], repos = "https://cran.rstudio.com/", ask = FALSE),
|
tryCatch(update.packages(to_update[i], repos = "https://cran.rstudio.com/", ask = FALSE),
|
||||||
# message = function(m) invisible(),
|
# message = function(m) invisible(),
|
||||||
warning = function(w) message(w$message),
|
warning = function(w) message(w$message),
|
||||||
error = function(e) message(e$message))
|
error = function(e) message(e$message))
|
||||||
|
cat("Updated to '", to_update[i], "' v", as.character(packageVersion(to_update[i])), "\n", sep = "")
|
||||||
}
|
}
|
||||||
|
@ -44,7 +44,7 @@
|
|||||||
</button>
|
</button>
|
||||||
<span class="navbar-brand">
|
<span class="navbar-brand">
|
||||||
<a class="navbar-link" href="../index.html">AMR (for R)</a>
|
<a class="navbar-link" href="../index.html">AMR (for R)</a>
|
||||||
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.7.1.9028</span>
|
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.7.1.9029</span>
|
||||||
</span>
|
</span>
|
||||||
</div>
|
</div>
|
||||||
|
|
||||||
@ -190,7 +190,7 @@
|
|||||||
<div class="page-header toc-ignore">
|
<div class="page-header toc-ignore">
|
||||||
<h1 data-toc-skip>Data sets for download / own use</h1>
|
<h1 data-toc-skip>Data sets for download / own use</h1>
|
||||||
|
|
||||||
<h4 data-toc-skip class="date">20 August 2021</h4>
|
<h4 data-toc-skip class="date">21 August 2021</h4>
|
||||||
|
|
||||||
<small class="dont-index">Source: <a href="https://github.com/msberends/AMR/blob/master/vignettes/datasets.Rmd" class="external-link"><code>vignettes/datasets.Rmd</code></a></small>
|
<small class="dont-index">Source: <a href="https://github.com/msberends/AMR/blob/master/vignettes/datasets.Rmd" class="external-link"><code>vignettes/datasets.Rmd</code></a></small>
|
||||||
<div class="hidden name"><code>datasets.Rmd</code></div>
|
<div class="hidden name"><code>datasets.Rmd</code></div>
|
||||||
|
@ -92,7 +92,7 @@
|
|||||||
</button>
|
</button>
|
||||||
<span class="navbar-brand">
|
<span class="navbar-brand">
|
||||||
<a class="navbar-link" href="../index.html">AMR (for R)</a>
|
<a class="navbar-link" href="../index.html">AMR (for R)</a>
|
||||||
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.7.1.9028</span>
|
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.7.1.9029</span>
|
||||||
</span>
|
</span>
|
||||||
</div>
|
</div>
|
||||||
|
|
||||||
@ -240,12 +240,12 @@
|
|||||||
<small>Source: <a href='https://github.com/msberends/AMR/blob/master/NEWS.md'><code>NEWS.md</code></a></small>
|
<small>Source: <a href='https://github.com/msberends/AMR/blob/master/NEWS.md'><code>NEWS.md</code></a></small>
|
||||||
</div>
|
</div>
|
||||||
|
|
||||||
<div id="amr-1719028" class="section level1">
|
<div id="amr-1719029" class="section level1">
|
||||||
<h1 class="page-header" data-toc-text="1.7.1.9028">
|
<h1 class="page-header" data-toc-text="1.7.1.9029">
|
||||||
<a href="#amr-1719028" class="anchor" aria-hidden="true"></a><small> Unreleased </small><code>AMR</code> 1.7.1.9028</h1>
|
<a href="#amr-1719029" class="anchor" aria-hidden="true"></a><small> Unreleased </small><code>AMR</code> 1.7.1.9029</h1>
|
||||||
<div id="last-updated-20-august-2021" class="section level2">
|
<div id="last-updated-21-august-2021" class="section level2">
|
||||||
<h2 class="hasAnchor">
|
<h2 class="hasAnchor">
|
||||||
<a href="#last-updated-20-august-2021" class="anchor" aria-hidden="true"></a><small>Last updated: 20 August 2021</small>
|
<a href="#last-updated-21-august-2021" class="anchor" aria-hidden="true"></a><small>Last updated: 21 August 2021</small>
|
||||||
</h2>
|
</h2>
|
||||||
<div id="breaking-changes" class="section level3">
|
<div id="breaking-changes" class="section level3">
|
||||||
<h3 class="hasAnchor">
|
<h3 class="hasAnchor">
|
||||||
|
Loading…
Reference in New Issue
Block a user