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reference/as.sir.md
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@@ -504,16 +504,16 @@ options to set before analysis:
### After Interpretation
After using `as.sir()`, you can use the
[`eucast_rules()`](https://amr-for-r.org/reference/interpretive_rules.md)
defined by EUCAST to (1) apply inferred susceptibility and resistance
based on results of other antimicrobials and (2) apply intrinsic
resistance based on taxonomic properties of a microorganism.
[`interpretive_rules()`](https://amr-for-r.org/reference/interpretive_rules.md)
to (1) apply inferred susceptibility and resistance based on results of
other antimicrobials and (2) apply intrinsic resistance based on
taxonomic properties of a microorganism.
To determine which isolates are multi-drug resistant, be sure to run
[`mdro()`](https://amr-for-r.org/reference/mdro.md) (which applies the
MDR/PDR/XDR guideline from 2012 at default) on a data set that contains
S/I/R values. Read more about [interpreting multidrug-resistant
organisms here](https://amr-for-r.org/reference/mdro.md).
S/I/R values. Read more about [detecting multidrug-resistant organisms
here](https://amr-for-r.org/reference/mdro.md).
### Other
@@ -660,10 +660,10 @@ sir_interpretation_history()
#> # A tibble: 4 × 18
#> datetime index method ab_given mo_given host_given input_given
#> <dttm> <int> <chr> <chr> <chr> <chr> <chr>
#> 1 2026-02-09 12:50:16 1 MIC amoxicillin Escherich… human 8
#> 2 2026-02-09 12:50:17 1 MIC cipro Escherich… human 0.256
#> 3 2026-02-09 12:50:17 1 DISK tobra Escherich… human 16
#> 4 2026-02-09 12:50:17 1 DISK genta Escherich… human 18
#> 1 2026-02-12 19:41:27 1 MIC amoxicillin Escherich… human 8
#> 2 2026-02-12 19:41:27 1 MIC cipro Escherich… human 0.256
#> 3 2026-02-12 19:41:28 1 DISK tobra Escherich… human 16
#> 4 2026-02-12 19:41:28 1 DISK genta Escherich… human 18
#> # ℹ 11 more variables: ab <ab>, mo <mo>, host <chr>, input <chr>,
#> # outcome <sir>, notes <chr>, guideline <chr>, ref_table <chr>, uti <lgl>,
#> # breakpoint_S_R <chr>, site <chr>