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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9023</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9024</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -178,42 +178,43 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 0.25 0.002 0.0625 128 256 1 4 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 128 <=0.001 0.0625 64 0.0625 0.125 0.025 0.25 0.002 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.5 8 64 128 0.025 8 256 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 0.001 16 >=256 0.002 16 64 2 16 0.125 0.001 0.005</span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 0.001 0.01 64 0.001 0.002 128 0.5 32 1 0.001 2 0.125</span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 2 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 50 37 18 41 39 28 16 24 31 40 13 12 46 25 6 27 21 45 13 43 15 21 36 27 21</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 31 40 42 6 12 20 44 35 47 47 49 11 41 10 9 7 35 32 48 13 28 15 37 35 28</span>
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<span class="r-in"><span><span class="fu">random_rsi</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'rsi'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R S I R R R R S I S I S S S R S I I S S R R S S I</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] I S I S S I I I I R R I I R R R S S I R R I R R I</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 64 0.025 0.025 64 0.01 128 >=256 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 2 0.125 0.0625 16 0.005 0.002 0.25 0.002 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.25 8 <=0.001 4 <=0.001 0.125 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 1 32 64 <=0.001 2 0.025 8 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 32 0.002 0.005 2 0.025 0.005 0.025 128 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 32 8 128 0.005 1 0.01 0.5 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 2 4 <=1 <=1 8 8 16 4 4 2 <=1 <=1 16 4 <=1 16 16 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [20] <=1 8 16 16 16 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] <=0.5 >=16 1 4 >=16 >=16 2 >=16 8 1 <=0.5 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] >=16 4 2 2 8 2 2 4 1 8 >=16 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 1 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.5 1 0.5 0.5 0.0625 2 1 0.5 0.5 0.0625</span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 1 0.25 0.125 2 0.25 2 0.125 1 0.0625 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] >=4 1 0.125 1 0.0625</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] <=0.025 <=0.025 0.5 0.125 <=0.025 <=0.025 16 0.5 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 8 1 2 16 16 <=0.025 16 0.5 <=0.025</span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.25 4 2 0.125 1 1 <=0.025</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 42 48 22 13 8 14 38 49 12 38 37 21 41 11 48 44 34 27 33 41 10 44 36 11 42</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 34 18 36 49 44 12 50 42 50 50 28 17 42 40 16 44 24 44 48 10 15 49 49 16 45</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 11 17 12 17 17 14 15 17 16 16 16 15 16 12 13 12 15 12 12 11 13 14 17 13 16</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 17 14 16 16 17 16 16 16 17 13 14 11 15 11 17 12 13 13 14 14 17 16 11 14 11</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 19 27 24 21 24 19 16 17 19 22 26 24 18 25 22 27 20 24 24 19 27 26 21 27 21</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 18 17 15 19 25 23 27 23 15 22 23 17 16 27 22 21 20 19 17 20 25 15 26 24 23</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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